Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq684 663 0.0 >seq684 Length=114989 Score = 663 bits (734), Expect = 0.0 Identities = 716/943 (76%), Gaps = 4/943 (0%) Strand=Plus/Minus Query 124049 GCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCCAAGTTT 124108 |||| ||||| ||||||||||| || || | ||| ||||| ||||||||||| || | Sbjct 69445 GCTAAATCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCA 69386 Query 124109 GCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGC-ATCAACAACTGA 124167 || | ||| | || ||| |||| || || | || || || |||||||||||| Sbjct 69385 GCACGGTTGATAATGTCAGCCCAAGTGTTGATCACACGACC-TTGGCTATCAACAACTGA 69327 Query 124168 TTGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATAGAGGTTAA 124227 |||||| |||||||| || || ||||||||||||||||||| || || | || ||||| Sbjct 69326 TTGGTTGAAGTTGAATCCGTTTAAGTTGAATGCCATTGTGCTAATTCCAAGAGCAGTTAA 69267 Query 124228 CCATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAA 124287 ||| | || |||||| || || | |||| ||||||||| | | | |||||||||||| Sbjct 69266 CCAGATACCTACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTGAA 69207 Query 124288 TGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATGTTGTATGT 124347 || || |||||||| | ||| ||||||||||||||||| ||||| |||||||| || Sbjct 69206 ACTTGCGTATTGGAAGATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGT 69147 Query 124348 TTCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTTGTTTCTCT 124407 ||||||||||||||| || || ||||| ||||| || | ||| ||||| | Sbjct 69146 TTCTTCTTCTTGTCCAAATTTGTAACCGTAGTTAGCAGATACACCGTCTTCAGTTTCACG 69087 Query 124408 GATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCCGAACAT 124467 ||||| | |||||| ||||||||||| |||||||| |||||||||||| || |||| Sbjct 69086 GATTAAACTAGATGTTACAAGAGAACCGTGCATTGCACTGAATAAAGATCCACCAAACAC 69027 Query 124468 TCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAAC 124527 || || || || ||||| ||||| || ||||| |||||||| || ||||||||||| || Sbjct 69026 ACCAGCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAATAC 68967 Query 124528 GAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTG 124587 ||||| |||||||||||||| |||||||| | ||||||||||||||||| ||| || Sbjct 68966 TAACATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAGCTACCTTG 68907 Query 124588 ACCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCAAC 124647 || | |||||| | ||||||||| || ||| |||| |||||| ||||| |||| || Sbjct 68906 TCCGATTGGGTAAATTAAGAATACTGCACTTGCTGCAGCTACTGGAGCTGAGAAAGCTAC 68847 Query 124648 ACAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCCATGTATGC 124707 | |||||||||||||| ||||| | ||| |||||||| | | ||||||||| Sbjct 68846 GAAAATCCAAGGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATGTAGCA 68787 Query 124708 TGAAATACC-AATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACCATTATACAACC 124766 | | ||| |||||| ||||| || | ||| | || ||||||||||| || || | || Sbjct 68786 AGCTACACCTAATAAG-AAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAAAGCC 68728 Query 124767 ATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCGTTTGATG 124826 |||| || |||| || |||||||| | |||||||||||| | || |||||||| || Sbjct 68727 ATTCGTCTACAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCAATAGCGTTAGAAC 68668 Query 124827 ATGGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAACCCGCTACTGGTT 124886 ||||| ||| ||||| | ||| |||||||| || ||||| | || || || ||||||| Sbjct 68667 TTGGAATAACCGCACCTGTGATAATGTTGTTTCCGTATAAAAGTGATCCAGCCACTGGTT 68608 Query 124887 CTCTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACGATGAAACATGCTG 124946 | | ||| || |||||||| || ||||||||||| || || || | |||||| || || Sbjct 68607 CACGGATACCATCGATATCTACTGGAGGTGCTGCGATGAAAGCGATGATGAAGCAGCTTG 68548 Query 124947 CTGCTGTGAGTAAGCATGGAATCATTAGAACACCAAACCAACC 124989 ||||| | ||| || ||||||| |||||| |||||||| Sbjct 68547 TAGCTGTTAATAATGTAGGGATCATTAAAACACCGAACCAACC 68505 Score = 572 bits (634), Expect = 2e-158 Identities = 760/1051 (72%), Gaps = 27/1051 (3%) Strand=Plus/Minus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | |||||| || || ||||||||||||||||| ||||| ||||| Sbjct 38922 TTAAAGGGCGTTTCCACGTGGTAAAACCTCCTCTGGGAATACAAAATTTTCATGTGGTTG 38863 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATT-AAGAAGAATGTTCTTCGTATAGA 122984 ||| | | |||||||| ||| || ||||| || || |||| | || || ||||||| Sbjct 38862 GTCCTGTGCGGCCATCCATGATCTAATACCTTCGTTTAATAAGA-TATTTTTAGTATAGA 38804 Query 122985 AAGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTC 123044 |||| || || ||||| ||||| ||||| | | |||||||||||||||||| ||||||| Sbjct 38803 AAGTTTCAAATTCTGGATCTTCAGCTGCACGAAGCTCTTGAGATACAAAGTCATATGCTC 38744 Query 123045 TGAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAA 123104 | | ||| | ||||| |||||| ||||| | ||| |||||| | ||| | || |||| Sbjct 38743 TTAAGTTTAATGCTAAACCTACTATACCAAAAGAACTTGTCCATAAACCTGTTACTGGAA 38684 Query 123105 CGAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTG 123164 | || ||||| | ||| || | | | |||||||||||| || | |||||| || || | Sbjct 38683 CAAATAACATGAAGAAATGAAGCCAACGTTTGTTAGAAAAAGCAACACCAAAAATTTGAG 38624 Query 123165 ACCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATG 123224 ||||||||||||||||||| | ||| ||||||||||||| ||||| || ||| | Sbjct 38623 ACCAGAATCTGTTCGCTGTTACCATTGAATAAGTTTCTTCTGATTGTGTTGGTGTGAAAG 38564 Query 123225 CTCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATG 123284 | | ||| || | || | | ||| || |||| | |||| Sbjct 38563 CACGGAATGT---------ATTCGCAGCATCACCAT------------CTTCGAATAATG 38525 Query 123285 TGTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAA 123344 |||| | || || || |||||||| ||| ||| || ||| ||||||| |||||||| | Sbjct 38524 TGTTTTCTACAGTAGCTCCATGAATTGCAGATAATAGTGCACCACCTAAAATTCCTGCTA 38465 Query 123345 CACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATAT 123404 ||||||||||||| |||||||| | ||| ||| ||||||||||||| |||||| | Sbjct 38464 CACCCATCATGTGGAATGGATTAAGTGTCCAGTTATGGAAACCTTGTAAGAATAATAGGA 38405 Query 123405 AACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCT-GACCTAGT 123463 | || || || ||||| || || || || || ||||||||||| |||| | |||| Sbjct 38404 ATCGGAAAATAGCTGCAACTCCAAAACTAGGAGCAAAGAACCAACT-TGCTTGTCCTAAA 38346 Query 123464 GGATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTG 123523 |||||||| | || | | ||| ||||||||| | || ||||| | ||| || Sbjct 38345 GGATAGATTAAGAATACAGAAACGAATACTGCGATAGGTCCTGAAAATGCAATTGCATTA 38286 Query 123524 TAAGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTC-TGAGCATGAAACCTATGAG 123582 || || | ||| |||||||| | || || |||||||||| | | || ||| || || | Sbjct 38285 TACGGACGAATACCTACAAGACGAGCAATTTCAAATTGTCGTAAACA-GAATCCAATTAA 38227 Query 123583 TCCAAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAAC 123642 |||||| | ||||||||||| ||||| |||||| || || | ||| | ||||||| Sbjct 38226 TCCAAATGCCCCATGTAATGCGACAAAAGTCCATAATCCACCTATTTGAAGCCAACGAGT 38167 Query 123643 GAATGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGAGACTATGACCCATTGCGTCACC 123702 || ||||||||| || |||||||| | || || | ||||||||| | | Sbjct 38166 AAAATCTCCTTGTGCCTCTGGTCCCCATAATAAGATCAATGAATGACCCATACTATTTGC 38107 Query 123703 AGGTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATACC 123762 |||||| || || ||| | ||||||||||| |||||| | || ||||| || | || Sbjct 38106 AGGTGTTGATACAGCTACAGTTAAGAAGTTGCATCCCTCTAAGTAAGAAGAAGCTAATCC 38047 Query 123763 ATGTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGATA 123822 |||||| ||||| |||||||| || ||||| ||| ||||| ||||| | || ||| | Sbjct 38046 ATGTGTGTACCAAGATGTAACAAAAGTAGTACCTGTTAACCATCCACCAACTGCAAGAAA 37987 Query 123823 CGCACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTTAA 123882 || || | | ||||||||| ||||| || || ||||| |||||||||| ||||| Sbjct 37986 TGCTGTTGGAAATAATAAAAGACCTGACCAACCAATAAATACGAAACGATCTCGTTTTAA 37927 Query 123883 CCAGTCGTCAAGAACATCAAACCAACCTCTT 123913 |||||| || | | ||||| ||||||| Sbjct 37926 CCAGTCATCGACTAAGTCAAATAGACCTCTT 37896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578993449563680