Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq684 715 0.0 >seq684 Length=114989 Score = 715 bits (792), Expect = 0.0 Identities = 732/949 (77%), Gaps = 10/949 (1%) Strand=Plus/Minus Query 26746 GGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAATCCAAGACCAGCACGGTTGAGA 26805 || || || || ||||| | |||||| || || || | || | | |||||||||||| | Sbjct 69433 GGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCAGCACGGTTGATA 69374 Query 26806 ACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCAATCACAGACTGATTGAAGTTG 26865 | ||| ||||||||||||| ||||||||| || ||||| || || || ||||||||| Sbjct 69373 ATGTCAGCCCAAGTGTTGATCACACGACCTTGGCTATCAACAACTGATTGGTTGAAGTTG 69314 Query 26866 AAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGGTGAACCAGATGCCAACA 26925 || ||||| | ||||| ||||| ||| | ||||| || || |||||||| || ||| Sbjct 69313 AATCCGTTTAAGTTGAATGCCATTGTGCTAATTCCAAGAGCAGTTAACCAGATACCTACA 69254 Query 26926 ACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTTGAATGAAGCATATTGG 26985 || ||||| ||||| | ||||||||| || | ||||||||||||||| || |||||| Sbjct 69253 ACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTGAAACTTGCGTATTGG 69194 Query 26986 AAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATGTTGTAGGTCTCTTCTTCTTGA 27045 ||||| ||||| || ||||| || ||||| || ||||||||||| || ||||||||||| Sbjct 69193 AAGATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTTTCTTCTTCTTGT 69134 Query 27046 CCGAACTTATAACCATAGTT--CTGTGACTCAGT-TTCAGTCGTCTCACGGACGAGTGAA 27102 || || || ||||| ||||| | | || | || |||| || ||||||| | | Sbjct 69133 CCAAATTTGTAACCGTAGTTAGCAGATACACCGTCTTCA---GTTTCACGGATTAAACTA 69077 Query 27103 GATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCACCGAATACCCCAGCAACA 27162 ||||| || ||| |||||||| ||| ||| | ||||||||| || || ||||||||| Sbjct 69076 GATGTTACAAGAGAACCGTGCATTGCACTGAATAAAGATCCACCAAACACACCAGCAACA 69017 Query 27163 CCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGAATACAAGCATGTAG 27222 || ||| ||||| ||||||||||| || ||||||||||| |||||||| | |||| || Sbjct 69016 CCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAATACTAACATGAAG 68957 Query 27223 TTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAAGAACCTTGACCGAAAGGA 27282 || ||||||||||||||||| | ||||||| |||| ||||| |||||| |||| || Sbjct 68956 TTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAGCTACCTTGTCCGATTGGG 68897 Query 27283 TAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAATATGCTACACAGATCCAT 27342 || | | |||||||||||| || ||||| |||||||| || | ||||| | ||||| Sbjct 68896 TAAATTAAGAATACTGCACTTGCTGCAGCTACTGGAGCTGAGAAAGCTACGAAAATCCAA 68837 Query 27343 GGACGCATACCTAAACGATATGAGAGTTCCCACTCACGTCCCATATAAGCATAG--ATGC 27400 |||||||| |||||||| || |||||||| ||||||||||| | |||| || | | Sbjct 68836 GGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATGT-AGCA-AGCTACAC 68779 Query 27401 CGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTTATACAACCACTCATCGA 27460 | | | |||||| || ||||| |||||| ||||||||||||| || | ||| || || | Sbjct 68778 CTAATAAGAAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAAAGCCATTCGTCTA 68719 Query 27461 GTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCATTTGAACTTGGGACAA 27520 || || |||||||| | |||||||||||| | ||| || || || |||||||| | || Sbjct 68718 CAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCAATAGCGTTAGAACTTGGAATAA 68659 Query 27521 CTGCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGGGTTCACGAATAC 27580 | ||||| | || |||||||| || || | |||||| ||||| || |||||||| |||| Sbjct 68658 CCGCACCTGTGATAATGTTGTTTCCGTATAAAAGTGATCCAGCCACTGGTTCACGGATAC 68599 Query 27581 CGTCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAAGCAGACAGTTGCTGCTA 27640 | || ||||| || || |||||||||||||| |||| ||||||||| || |||| || Sbjct 68598 CATCGATATCTACTGGAGGTGCTGCGATGAAAGCGATGATGAAGCAGCTTGTAGCTGTTA 68539 Query 27641 ACAGTGTTGGGATCATCAGTACACCGAACCAACCAACATACAAACGGTT 27689 | | ||| |||||||| | |||||||||||||| | || |||||||| Sbjct 68538 ATAATGTAGGGATCATTAAAACACCGAACCAACCGATGTATAAACGGTT 68490 Score = 462 bits (512), Expect = 3e-125 Identities = 692/977 (71%), Gaps = 4/977 (0%) Strand=Plus/Minus Query 23429 AAAGTTTTCGTGTGGTTGGTCAATAGTCATCATCCATTCACGGAGGCCATTGTTCAACAA 23488 ||| ||||| ||||||||||| | ||||||| | | || | ||| || || Sbjct 38880 AAAATTTTCATGTGGTTGGTCCTGTGCGGCCATCCATGATCTAATACCTTCGTTTAATAA 38821 Query 23489 AATATTTTTCGTGTAGAAGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGACT 23548 |||||||| || ||||| || ||| | ||||||||| ||||||| ||||||| Sbjct 38820 GATATTTTTAGTATAGAAAGTTTCAAATTCTGGATCTTCAGCTGCACGAAGCTCTTGAGA 38761 Query 23549 CACAAAATCATAAGCACG-AAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCC 23607 ||||| ||||| || | ||| |||| || || | | || |||| |||| || Sbjct 38760 TACAAAGTCATATGCTCTTAAGTTTAATGCTAAACCTACT-ATACCAAAAGAACTTGTCC 38702 Query 23608 AAAGACCCATGACAGGAACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACG 23667 | | ||| | || |||||||| ||||| ||||| || | |||||| || || ||| | Sbjct 38701 ATAAACCTGTTACTGGAACAAATAACATGAAGAAATGAAGCCAACGTTTGTTAGAAAAAG 38642 Query 23668 CAACCCCGAAGATTTGTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCT 23727 |||| || || ||||| ||||| || | || ||||| ||||| ||||| || || || Sbjct 38641 CAACACCAAAAATTTGAGACCAGAATCTGTTCGCTGTTACCATTGAATAAGTTTCTTCTG 38582 Query 23728 CCTGAGTGGAATCGAACGCTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTAT 23787 || || | ||| || || || || || || |||||||| | | ||| | Sbjct 38581 ATTGTGTTGGTGTGAAAGCACGGAATGTATTCGCAGCATCACCATCTTCGAATAATGTGT 38522 Query 23788 TCTCGACAGTAACTCCATGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTC 23847 | || |||||| |||||||||| ||||| | ||||| || || | || || || || | Sbjct 38521 TTTCTACAGTAGCTCCATGAATTGCAGATAATAGTGCACCACCTAAAATTCCTGCTACAC 38462 Query 23848 CCATCATATGGAAGGGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACC 23907 ||||||| ||||| || || || ||||||||||| || || || | ||| | ||||| | Sbjct 38461 CCATCATGTGGAATGGATTAAGTGTCCAGTTATGGAAACCTTGTAAGAATAATAGGAATC 38402 Query 23908 TGAAAATCGCCGCAACACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGAT 23967 |||||| || ||||| || ||||| || |||||||||||| || ||||| ||||||| Sbjct 38401 GGAAAATAGCTGCAACTCCAAAACTAGGAGCAAAGAACCAACTTGCTTGTCCTAAAGGAT 38342 Query 23968 AGATGAGGAATACAGACACGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGG 24027 |||| | ||||||||| |||||||| || ||||| || ||||| ||||| ||||| || | Sbjct 38341 AGATTAAGAATACAGAAACGAATACTGCGATAGGTCCTGAAAATGCAATTGCATTATACG 38282 Query 24028 GACGGATTCCAATTAGACGTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCAA 24087 |||| || || | ||||| || | |||||| || ||||| || || || | | ||| Sbjct 38281 GACGAATACCTACAAGACGAGCAATTTCAAATTGTCGTAAACAGAATCCAATTAATCCAA 38222 Query 24088 AGGCACCGTGGAGAGCAACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCGTTGAAAGT 24147 | || || || | || ||||| | ||| | || || | ||| ||||| || ||| | Sbjct 38221 ATGCCCCATGTAATGCGACAAAAGTCCATAATCCACCTATTTGAAGCCAACGAGTAAAAT 38162 Query 24148 CCCCTTGAGACTCAGGACCCCAAAGTAGAAGAAGAGAATGACCCATAGCGTCAGCAGGCG 24207 | ||||| | ||| || ||||| | || | | |||||||||||| | ||||| | Sbjct 38161 CTCCTTGTGCCTCTGGTCCCCATAATAAGATCAATGAATGACCCATACTATTTGCAGGTG 38102 Query 24208 TCGAGACAGCTGCCGTAAGAAAGTTAGCA-CCCTCAAGATAGGAACTAGCAAGTCCATGG 24266 | || |||||| | || | ||||| ||| ||||| | || ||| ||| | |||||| Sbjct 38101 TTGATACAGCTACAGTTAAGAAGTT-GCATCCCTCTAAGTAAGAAGAAGCTAATCCATGT 38043 Query 24267 GTGTACCAACTCGTAACAAAAGCTGTGCCAGTAAGCCAACCGCCAATGGCAAGATAAGCA 24326 ||||||||| |||||||||| || || || | ||| || |||| |||||| | || Sbjct 38042 GTGTACCAAGATGTAACAAAAGTAGTACCTGTTAACCATCCACCAACTGCAAGAAATGCT 37983 Query 24327 GTGGGAAGAAGTAGGAGTCCAGACCAACCCACAAAGACAAAGCGATCCCGTTTAACCCAG 24386 || |||| | || || || |||||||| | ||| || || ||||| ||||| | |||| Sbjct 37982 GTTGGAAATAATAAAAGACCTGACCAACCAATAAATACGAAACGATCTCGTTTTAACCAG 37923 Query 24387 TCGTCCAAGATGTCAAA 24403 || || | | |||||| Sbjct 37922 TCATCGACTAAGTCAAA 37906 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 32621 TCTTCTTGTTCAGTTTCAATTATAACATCAGAAGTTGGATATGCAACACAAGTGAGCACA 32680 |||||||| | ||| |||| | |||||| | ||||| ||||||||||| | || Sbjct 19095 TCTTCTTGATTTGTTAAAATTTGACAATCAGATGCGGGATAAGCAACACAAGTTAATACG 19036 Query 32681 AACCCTTCTTCAATTTGATCATCATCCAAGAACGACTGATCACTTTGGTCTACTGTACCA 32740 || |||||| ||| |||||| || || || |||||||| || ||| || | ||||||| Sbjct 19035 AATCCTTCTGCAACTTGATCGTCTTCTAAAAACGACTGTTCTGATTGATCAATTGTACCA 18976 Query 32741 GATACAATCTTACCTGCACAAGATGAACAGGCACCTGCACGACAAGAGTAGTTTAAATCA 32800 ||| | |||||||||| |||||| | ||| | | |||||| || || ||| Sbjct 18975 CCTACTACACGTCCTGCACAAGTTGAACAAGAACCAGATCTACAAGAATAAGGTAGTTCA 18916 Query 32801 ACCCCACCTTCCTCTGCTGCATCAAGGATGTATTGATCATCAGCACAA 32848 | || ||| ||||| ||||| | ||||||| ||| ||| ||||| Sbjct 18915 AATCCGTTTTCTTCTGCAGCATCTAAAATGTATTCATCGTCATCACAA 18868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665488710022880