Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq6 170 2e-37 seq1 114 2e-20 seq4 87.8 2e-12 >seq6 Length=1241202 Score = 170 bits (188), Expect = 2e-37 Identities = 588/903 (65%), Gaps = 23/903 (3%) Strand=Plus/Plus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGG 75187 ||||||| ||||| || |||||||| | ||||| || || ||| || |||| | Sbjct 393458 CGGGACTTTGATTATGACTACTTTGGCTTTAAAACGCTGGAAAAGTCGTACCTTCTTAAG 393517 Query 75188 CTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATC 75247 | | || | | ||||| ||| ||| ||||| ||||||| || ||||| || ||| Sbjct 393518 ATGAACGGGGTAGTTATGGAGCGCCCCCAGCACATGATCATGCGTGTGGCAATTGGTATC 393577 Query 75248 CACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTC 75307 ||| || ||||||| | | ||||||| ||| | ||||| | | ||| Sbjct 393578 CACAAAGAGAACATTGACGCGGCGCTGGAGACCTACAATCTCATGTCGCTCAAACTTTTC 393637 Query 75308 ATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGC 75367 | || || || || || || |||||||| || ||||| | || || | ||| ||| Sbjct 393638 ACGCATGCTACGCCTACACTTTTCAATGCCGGCACACCGCGGCCCCAACTCTCCTCCTGC 393697 Query 75368 TTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGT 75427 ||||| | ||| ||||||||||| ||| |||| ||||| | || || | | | || Sbjct 393698 TTCCTCCTGACCATGAAGGAGGACTCCATCGACGGCATCTACGACACCCTCAAGCAATGC 393757 Query 75428 GCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGC-CAA 75486 || || || || | || || || ||||| | |||||| | | | || | | Sbjct 393758 GCTGCCATTTCCAAATTTGCGGGTGGGATTGGCGTATCCATCCACAACATTCGGGCGCGA 393817 Query 75487 TAAATCTCGT--ATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGC 75544 | ||| | ||||| || | || || || | || || | || ||||| ||| Sbjct 393818 GA---CTCCTACATTCGTGGATCGAACGGCACCTCCAACGGCATCGTACCTATGCTCCGC 393874 Query 75545 GTATTTAACGCCACAGCGCGCTATGTAAATCA-AGCGG-GGC-GTCGCAAGGGGTCCATC 75601 || || |||| || || ||||| || | || |||| ||| |||||||| ||| || Sbjct 393875 GTTTTCAACGATACGGCCCGCTACGTCGACCAGGGCGGAGGCAAGCGCAAGGGTTCCTTC 393934 Query 75602 GCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAAC 75661 || ||||| | || || |||||||| || ||| | || ||||| || | || ||| Sbjct 393935 GCCATCTACCTAGAGCCCTGGCATGCAGACATCTTTGAATTCCTGGACCTGCGTAAGAAC 393994 Query 75662 CAAGGTGACGAAGAGGCTCGGTGTA-GAGATCTCTTTTCATCCCTGTGGATTCCAGACCT 75720 || || |||| || | ||| | | ||||| || | |||| |||| || ||||| Sbjct 393995 CACGGCAACGAGTTGGAGC-GTGCACGTGATCTGTTCTACGCCCTCTGGACGCCCGACCT 394053 Query 75721 TTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACC 75780 |||||| ||| || ||| | || | ||||| ||||| || || || || || Sbjct 394054 GTTCATGCGGCGCGTGGAGAGCGACGGGGACTGGTCCCTTTTTTGCCCCAACGAGTGCCC 394113 Query 75781 AGGTCTCTCCGACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGA 75840 || || | |||| | || ||||||||| | |||||| | | || | ||| || Sbjct 394114 GGGCCTGGCGGACGTGTGCGGCGAGGAGTTTAACCAGCTCTACGCCAGCTACG-AGAAGA 394172 Query 75841 G-GGTAGAGC---CAATGCGACT--GTACCAGCCGCCGATGTTTGGAAGGCTATTCTCAA 75894 | || | ||| ||| | | | | ||||| || | ||| || ||||| | Sbjct 394173 GTGGGAAAGCACGCAAGGTTATTAAGGCCCAGCAGC-----TCTGGTTCGCGATTCTGGA 394227 Query 75895 ATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAG 75954 || ||| |||||| || || || || ||||| | |||||| || || ||| ||| Sbjct 394228 CTCCCAGGTGGAGACAGGCACGCCTTACATGCTGTTCAAGGACGCCTGCAACCTGAAATC 394287 Query 75955 TAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTA 76014 ||||| |||| ||||| || ||||| || ||||| |||||||| || | ||||| Sbjct 394288 AAACCAGCAGAACTTGGGCACCATCAAATCATCCAATCTGTGCACGGAGATCATCGAGTA 394347 Query 76015 CAC 76017 ||| Sbjct 394348 CAC 394350 >seq1 Length=1546440 Score = 114 bits (126), Expect = 2e-20 Identities = 302/456 (66%), Gaps = 14/456 (3%) Strand=Plus/Minus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGT-GGTGCCAAGATCCC 175289 ||| | || || || |||||| | ||||| | ||| ||| || || || |||||||| Sbjct 801526 GAGGTAGTTGACTTCCTCAAGAACCCCGAAAAATACAC-GGACGTAGGCGCAAAGATCCC 801468 Query 175290 CCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCAT 175349 || || | | | | || || || ||||| ||||| || || || |||| | Sbjct 801467 TCGCGGGGTGATCTTGGACGGACCCCCCGGGACGGGTAAGACACTGCTGGCTAAAGCCGT 801408 Query 175350 CGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTT 175409 |||||| || || || || |||||| | | | | | | | ||||| |||||||| Sbjct 801407 CGCGGGGGAGTCGGGCGTGCCCTTCATCTCGGCCGCCGGCTCGGAGTTTGTTGAGATGTT 801348 Query 175410 TGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAA-- 175467 ||| || ||||||||| | || |||||| | || ||| | ||||| | || Sbjct 801347 TGTGGGGGTGGGTGCCTCGCGTGTGCGCGATATGTTCGAA----CAGGCGAAGAAGAACG 801292 Query 175468 --CCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTG 175525 ||||| || | || || || ||||||||||| |||||| || ||| | || | | Sbjct 801291 CGCCATGCATCATTTTTATCGACGAGATTGATGCCGTGGGCCGTCAGCGCGGGGC--GGG 801234 Query 175526 GTATGCC--AGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGA 175583 | |||| || || |||||| | || || || | || || || || ||||||||||| Sbjct 801233 CTTTGCCGGAGGGAACGACGAGCGGGAGCAGACCCTGAACCAGCTGCTGACCGAGATGGA 801174 Query 175584 TGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCT 175643 ||||| || | |||| || | || || || ||||| ||||| | || || | Sbjct 801173 CGGCTTCGAGGGCAACCCTGGGATCATCGTCATCGCCGCCACCAATCGTGCAGACGTCTT 801114 Query 175644 TGATGACGCCCTCCTTCGCCCGGGTCGTTTTGATCG 175679 || | ||| | || |||||||| || || ||||| Sbjct 801113 GGACCAGGCCTTGCTCCGCCCGGGCCGCTTCGATCG 801078 >seq4 Length=1364975 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127 || || ||||||||| | | || ||||| |||||||| ||||| |||||||| || Sbjct 237744 TCTTTTGCCGAGCGCTTGATCGCCTTTGCAGCCGTGGAGGGCATCTTTTTCTCCGGCTCC 237803 Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCC 65168 |||||| | |||| ||||||||||||||||| || ||||| Sbjct 237804 TTCTGCTCGATTTTCTGGTTGAAGAAGCGGGGCCTGATGCC 237844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596564499329920