Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq684 603 1e-167 >seq684 Length=114989 Score = 603 bits (668), Expect = 1e-167 Identities = 726/979 (74%), Gaps = 10/979 (1%) Strand=Plus/Minus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 ||||| |||| ||||||||||| || || | ||| ||||| |||||||||||||| | Sbjct 69445 GCTAAATCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCA 69386 Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGAT 8010 || | ||| | | |||| |||| || || | ||| | ||||||||||||| Sbjct 69385 GCACGGTTGATAATGTCAGCCCAAGTGTTGATCACACGACCTTGGCTATCAACAACTGAT 69326 Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAAC 8070 ||||| ||||| |||||||| | ||| ||||||||||||| ||| || | || ||||||| Sbjct 69325 TGGTTGAAGTTGAATCCGTTTAAGTTGAATGCCATTGTGCTAATTCCAAGAGCAGTTAAC 69266 Query 8071 CAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTTAAAC 8130 || | || ||||||||| | | ||| | ||||||||| | | | |||||| || Sbjct 69265 CAGATACCTACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTGAAA 69206 Query 8131 GATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTC 8190 ||| || ||||||||||| | |||||||| || || ||||| || || || || || Sbjct 69205 CTTGCGTATTGGAAGATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTT 69146 Query 8191 TCTTCTTCTTGACCAAACTTATAACCATAGTT--CTGAGACTCT-TCTTCAGTTGTCTCT 8247 ||||||||||| ||||| || ||||| ||||| | || || | ||||||||| || Sbjct 69145 TCTTCTTCTTGTCCAAATTTGTAACCGTAGTTAGCAGATACACCGTCTTCAGTT---TCA 69089 Query 8248 CTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAAC 8307 | ||||| | |||||| || | |||||||||||| |||||||| | |||||||| ||| Sbjct 69088 CGGATTAAACTAGATGTTACAAGAGAACCGTGCATTGCACTGAATAAAGATCCACCAAAC 69029 Query 8308 ATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAAT 8367 | ||| || || || ||||||||||| || |||||||||||||| || |||||||||||| Sbjct 69028 ACACCAGCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAAT 68969 Query 8368 ACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCC 8427 || ||||||||||| || |||||||| ||||||| |||||| ||||||||||| ||| Sbjct 68968 ACTAACATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAGCTACCT 68909 Query 8428 TGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCT 8487 || || | ||| || | |||||| ||||| || |||| ||||||||| | ||| Sbjct 68908 TGTCCGATTGGGTAAATTAAGAATACTGCACTTGCTGCAGCTACTGGAGCTGAGAAAGCT 68849 Query 8488 ACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACT-CCCACTGTCTACCCATGTA 8546 || | ||||| || | ||| ||||| ||||| | ||| | |||| | | |||||||| Sbjct 68848 ACGAAAATCCAAGGACGCATCCCTAAACGGTA-GCTAAGTTCCCATTCACGTCCCATGTA 68790 Query 8547 AGCAGAAATTCC-AATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACA 8605 || | || |||||| ||||| || | || | || || ||||| ||||| || | Sbjct 68789 GCAAGCTACACCTAATAAG-AAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAAA 68731 Query 8606 ACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGG 8665 ||| || |||| | ||||||||||||| || |||||||| | ||||||||||| | Sbjct 68730 GCCATTCGTCTACAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCAATAGCGTTAG 68671 Query 8666 AAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAG 8725 || ||||| || ||||| | ||| ||||||||||| || | | ||| || || || | Sbjct 68670 AACTTGGAATAACCGCACCTGTGATAATGTTGTTTCCGTATAAAAGTGATCCAGCCACTG 68611 Query 8726 GTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAG 8785 ||||||| ||||| |||||||| || || || || || || || || | ||| ||||| Sbjct 68610 GTTCACGGATACCATCGATATCTACTGGAGGTGCTGCGATGAAAGCGATGATGAAGCAGC 68551 Query 8786 TAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGT 8845 | | ||| | ||| || ||| ||||||| ||| || |||||||||| || | | || Sbjct 68550 TTGTAGCTGTTAATAATGTAGGGATCATTAAAACACCGAACCAACCGATGTATAAACGGT 68491 Query 8846 TGTTTGTACTTGTAACCCA 8864 | | ||| || || | ||| Sbjct 68490 TTTCTGTGCTAGTGATCCA 68472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615857134376480