Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq684 717 0.0 >seq684 Length=114989 Score = 717 bits (794), Expect = 0.0 Identities = 754/989 (76%), Gaps = 6/989 (1%) Strand=Plus/Plus Query 165760 TGGGAATCCTTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTT 165819 ||||| ||||||| ||| | || |||||| | |||||| | || |||||||||| Sbjct 68454 TGGGAGCGCTTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTC 68513 Query 165820 GGTACGCTGATGATTCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTCGCCTTCATC 165879 ||| | ||||| || || | || |||| || | |||||||||| |||| |||||| Sbjct 68514 GGTGTTTTAATGATCCCTACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCATC 68573 Query 165880 GCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTAT 165939 || || || || || || ||||| || ||||||||||| || ||||| || || | || Sbjct 68574 GCAGCACCTCCAGTAGATATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATAC 68633 Query 165940 GGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTC 165999 || |||||||| ||| | ||||| ||| |||| ||| ||||| |||||| | |||||| Sbjct 68634 GGAAACAACATTATCACAGGTGCGGTTATTCCAAGTTCTAACGCTATTGGTATTCACTTC 68693 Query 166000 TATCCCATCTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAA 166059 || || | |||||||| || || | ||||||||||| || ||||||||||||| |||| Sbjct 68694 TACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGGCTTTACAACGGTGGTCCTTACCAA 68753 Query 166060 CTGGTTGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTG 166119 || || || || |||||| | | || | | ||||||||| ||||| |||||||| Sbjct 68754 CTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGCTACATGGGACGTGAATGGGAACTT 68813 Query 166120 TCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCT 166179 |||||| |||| |||||||| ||||| | || |||| |||||| ||||| ||||| Sbjct 68814 AGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCA 68873 Query 166180 GCGAGTGCAGTATTCCTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCA 166239 || |||||||||||| || | || || |||| |||||||| |||||||||| ||||| Sbjct 68874 GCAAGTGCAGTATTCTTAATTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATGCCT 68933 Query 166240 CTCGGAATCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTC 166299 | || ||||| || || ||||||| |||||| || |||||||| || ||||| ||||| Sbjct 68934 TTAGGTATCTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTT 68993 Query 166300 ATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCT 166359 ||||| || ||||||||| || |||||||| || |||||||| ||| || ||||| Sbjct 68994 ATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGTGCA 69053 Query 166360 ATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAA-AC--CGAATCC 166416 |||||||| | | || || ||| | | | | || |||||| || | ||| Sbjct 69054 ATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGTGA---AACTGAAGACGGTGTATCT 69110 Query 166417 CAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCAT 166476 |||||||||||||| || ||||||||||||||||| |||||||||||||| || || Sbjct 69111 GCTAACTACGGTTACAAATTTGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACAC 69170 Query 166477 GGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCAC 166536 |||||||| || ||||| |||||||||||||| ||||||||||| || | || ||| Sbjct 69171 GGTTACTTTGGACGTTTAATCTTCCAATACGCAAGTTTCAACAACTCACGTGCTTTACAC 69230 Query 166537 TTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACG 166596 |||||| | ||||| ||||| ||||| || |||||||| || || ||||| | ||| Sbjct 69231 TTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGAATTAGCACA 69290 Query 166597 ATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGT 166656 |||||||||||| | ||||| |||||||||||||| || | ||||| | || |||||| Sbjct 69291 ATGGCATTCAACTTAAACGGATTCAACTTCAACCAATCAGTTGTTGATAGCCAAGGTCGT 69350 Query 166657 GTGTTGAACACCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCAT 166716 ||| | ||||| ||||| || || | ||||| |||| | | ||||||||||| ||||| Sbjct 69351 GTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATGCAC 69410 Query 166717 GAGCGTAACGCACACAACTTCCCCCTCGA 166745 || |||||||| ||||||||||| || || Sbjct 69411 GAACGTAACGCGCACAACTTCCCTCTAGA 69439 Score = 569 bits (630), Expect = 2e-157 Identities = 737/1010 (73%), Gaps = 6/1010 (1%) Strand=Plus/Plus Query 167024 TCGATGACTGGCTTAAAAGGGATCGTTTTGTTTTTGTTGGCTGGTCTGGACTTCTTCTTT 167083 ||||||||||| | ||| | |||||||| || ||| |||| ||||| || ||| | | | Sbjct 37916 TCGATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGTCTTTTATTAT 37975 Query 167084 TTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGTCACGAGTT 167143 |||| || || | |||||| |||| || ||| | || || |||||||| || || || Sbjct 37976 TTCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTTGTTACATCTT 38035 Query 167144 GGTATACTCATGGACTCGCGTCCAGTTATCTTGAGGG-TGCGAACTTTCTTACTGCGGCA 167202 |||| || |||||| | || || ||| | ||||| ||| ||||| | |||| || Sbjct 38036 GGTACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGC-AACTTCTTAACTGTAGCT 38094 Query 167203 GTTAGTACTCCAGCAGATTCTATGGGTCATTCTTTACTTCTTCTATGGGGTCCTGAATCT 167262 || || || ||| || |||||||||||| || | | ||||||| || || | Sbjct 38095 GTATCAACACCTGCAAATAGTATGGGTCATTCATTGATCTTATTATGGGGACCAGAGGCA 38154 Query 167263 CAAGGGGATTTCGTCAGGTGGCTCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCAC 167322 ||||| ||||| | ||||| ||| | || ||| | ||| ||||||| || | || Sbjct 38155 CAAGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTTGTCGCATTACAT 38214 Query 167323 GGAGCCTTTGCTCTCATTGGTTTCATGCTT-CGACAGTTTGAACTTGCTCGCCTGATTGG 167381 || || |||| | ||||| ||| || || ||||| |||||| ||||||| || | || Sbjct 38215 GGGGCATTTGGATTAATTGGATTC-TGTTTACGACAATTTGAAATTGCTCGTCTTGTAGG 38273 Query 167382 TATCCGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTCTTCGTTAGCGTTTT 167441 ||| ||||| || ||||| ||||| || || || ||||| || || |||||| || || Sbjct 38274 TATTCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATTCGTTTCTGTATT 38333 Query 167442 CCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCCCGTCCTTCGGAGTCGCCGC 167501 | | ||||||| | || ||| || ||||||||||| || || ||||| || || Sbjct 38334 CTTAATCTATCCTTTAGGACAAGCAAGTTGGTTCTTTGCTCCTAGTTTTGGAGTTGCAGC 38393 Query 167502 CATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGACACTGAATCCATTTCA 167561 || ||||||||||| | ||| | ||||| ||||| ||||||||||| |||||||| || Sbjct 38394 TATTTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCA 38453 Query 167562 TATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCAATCCATGGTGTTAC 167621 ||||||||||||||||| || | ||||||||| | | |||||||| ||||| | ||| Sbjct 38454 CATGATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCTGCAATTCATGGAGCTAC 38513 Query 167622 AGTAGAGAATACTTTGTATGAAGATGGTGAGCAAGCAAACACTTTTAAGGCATTCGATTC 167681 ||||| || || || | ||||||||||| || || || || || ||| | Sbjct 38514 TGTAGAAAACACATTATTCGAAGATGGTGATGCTGCGAATACATTCCGTGCTTTCACACC 38573 Query 167682 TACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACCGATTCTGGTCTCAGATCTT 167741 || || |||||| |||||||||||||| ||||| ||| ||||||||||||| || || Sbjct 38574 AACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAACAGATTCTGGTCTCAAATTTT 38633 Query 167742 CGGCATTGCTTTCAGCAACAAACGCTGGCTTCATTTCTTTATGTTATTCGTTCCCGTTAT 167801 || ||||||| |||||||| |||||||||||||| |||||||| ||||| || | Sbjct 38634 TGGTGTTGCTTTTTCTAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCAGTAAC 38693 Query 167802 GGGACTTTGGACATCATCGATTGGCATCATTGGTCTGGCTCTTAATCTT-CGTGCTTACG 167860 || | |||||| || |||| || | ||| | || |||| ||| | || || | Sbjct 38694 AGGTTTATGGACAAGTTCTTTTGGTATAGTAGGTTTAGC-ATTAAACTTAAGAGCATATG 38752 Query 167861 ATTTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAGTTTGAAACTTTCTATACTA 167920 | || || ||||||||| | | || || || |||||||| ||||||||||||||||||| Sbjct 38753 ACTTTGTATCTCAAGAGCTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTATACTA 38812 Query 167921 AAAACATCCTTCTGAATGAAGGTCTTCGAGCATGGTTAGCACCTATCGATCAACCTCATG 167980 |||| ||| | | || |||||| || || ||||| | || | || ||||| |||| Sbjct 38813 AAAATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAGGACCAACCACATG 38872 Query 167981 AGAACTTTGTGTTCCCAGAGGAAGTTCTCCCACGAGGCAACGCACTATAA 168030 | || ||||| ||||||||||| ||| | ||||| || ||||| || ||| Sbjct 38873 AAAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAA 38922 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 18129 TCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAATC 18188 ||||||||||||||| || ||||| |||| ||||||| |||||||||| ||||||| || Sbjct 43239 TCCTCAGTAGCTCAGTGGTAGAGCAATCGGCTGTTAACCGATTGGTCGCTGGTTCAAGTC 43180 Query 18189 CTACCTGGGGAGTT 18202 | ||||||||||| Sbjct 43179 CAGCCTGGGGAGTT 43166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561243201329600