Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq4 134 2e-26 seq3 134 2e-26 seq684 122 1e-22 >seq4 Length=1364975 Score = 134 bits (148), Expect = 2e-26 Identities = 159/214 (74%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 171851 ATACTAGTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGG 171910 |||| || || |||||||||||||| || || || || || || || ||||| ||||| | Sbjct 829431 ATAC-AGCAGGATGCAAATCTTTGTTAAGACGCTGACGGGCAAGACCATCACGCTCGACG 829373 Query 171911 TTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTC 171970 | ||| | ||||| ||||| || | || |||||||| || ||||| || || | Sbjct 829372 TGGAGCCCAGTGACACGATCGAGAATGTGAAGCAGAAGATTCAGGACAAGGAGGGTATCC 829313 Query 171971 CACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCG 172030 | || |||||||| || || |||||||| || || ||||| || || || || || | Sbjct 829312 CCCCTGATCAGCAGCGCCTCATTTTTGCGGGGAAGCAGCTGGAGGACGGGCGCACGTTGT 829253 Query 172031 CTGATTACAACGTTCAAAAGGAGTCTACTCTACA 172064 |||| |||||| |||| || |||||||| ||||| Sbjct 829252 CTGACTACAACATTCAGAAAGAGTCTACCCTACA 829219 >seq3 Length=1384164 Score = 134 bits (148), Expect = 2e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||||| || || || || ||||| | || || ||| | Sbjct 138012 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACATTGGATGTCGAGCCCAGC 138071 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| || | || ||||||||||| ||||| |||||||| ||||||||| Sbjct 138072 GATACCATCGAAAATGTGAAGCAAAAGATTCAAGACAAGGAGGGCATTCCCCCCGATCAG 138131 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || ||||| || || || ||||| ||||| ||||| || || |||| |||||| Sbjct 138132 CAGCGCCTAATTTTCGCAGGAAAGCAGCTGGAAGACGGACGCACGCTGTCTGACTACAAC 138191 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTT-CGGGGTGG 172088 |||| || ||||| || | || |||| ||| |||| || ||||| Sbjct 138192 ATTCAGAAAGAGTCAACCTTGCA-CTTGGTCTTGCGCTTGCGTGGTGG 138238 >seq684 Length=114989 Score = 122 bits (134), Expect = 1e-22 Identities = 203/292 (70%), Gaps = 6/292 (2%) Strand=Plus/Plus Query 195696 AAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGG 195755 |||| || | | | || ||| | ||||| ||||| || || | ||| || ||| |||| | Sbjct 35323 AAACAGTAACAAAAGCTGTTATTACTGTCCCTGCATATTTTAATGACTCTCAAAGACAAG 35382 Query 195756 CGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAA 195815 | ||||| ||||| | | ||||| || || | || | ||||| |||||||||| Sbjct 35383 CAACAAAAGACGCAGGTAAAATTGCAGGATTAGAAGTACTACGTATTATAAATGAACCAA 35442 Query 195816 CAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGA 195875 |||| || || |||||||||| | ||||| || | || || ||| | || | Sbjct 35443 CAGCCGCAGCTCTTGCTTATGGGTTAGACAAAAA-----ATCAA-ATGAAACAATTTTAA 35496 Query 195876 TCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATAT 195935 | |||||| | ||||||||||| ||||| || || || | | ||| | |||| ||| Sbjct 35497 TTTTTGATTTAGGTGGTGGTACATTTGACGTTTCTATTTTAGAAGTTGGGGATGGTGTAT 35556 Query 195936 TCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 | |||||| || || || || |||| || |||||||||| ||||| || Sbjct 35557 TTGAAGTATTAGCAACGGCAGGAGATAGCCACTTAGGTGGTGATGATTTTGA 35608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657856775276480