Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq684 535 1e-147 >seq684 Length=114989 Score = 535 bits (592), Expect = 1e-147 Identities = 718/991 (72%), Gaps = 10/991 (1%) Strand=Plus/Plus Query 41225 TGGGAGCAGTTTTGTTCCTGGGTCACCTCTACTAATAACCGTCTTTATGTAGGATGGTTC 41284 ||||||| || || || ||| |||| || | |||||| | || | || |||||| Sbjct 68454 TGGGAGCGCTTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTC 68513 Query 41285 GGAGTCCTTATGATTCCGTGCCTCCTTGCC-GCTACAACTTGTTTTATTATCGCCTTTGT 41343 || || | ||||| || | | | || | ||||||| || || || ||||| || | Sbjct 68514 GGTGTTTTAATGATCCC-TACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCAT 68572 Query 41344 TGGCGCACCACCTGTTGACATCGATGGAATCCGAGAACCCGTCGCTGGCTCCCTGTTGTA 41403 | ||||| || || || |||||||| ||||| ||||| || ||||| || || || || Sbjct 68573 CGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATA 68632 Query 41404 TGGTAACAACATCATATCAGGAGCCGTCGTTCCGAGCAGTAATGCCATCGGACTACACTT 41463 || |||||||| || |||| || || |||| || ||| || || || | ||||| Sbjct 68633 CGGAAACAACATTATCACAGGTGCGGTTATTCCAAGTTCTAACGCTATTGGTATTCACTT 68692 Query 41464 CTACCCAATTTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCATTCCA 41523 ||||||| ||||||||||||| | | || |||||||| |||||||| ||||| | ||| Sbjct 68693 CTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGGCTTTACAACGGTGGTCCTTACCA 68752 Query 41524 ACTCACCGTATTCCACTTCCTCATTGGCGT-CTTTGCTTACATGGGACGAGAGTGGGAAC 41582 ||| ||||| |||||| | | || || |||| ||||||||||| || ||||||| Sbjct 68753 ACTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGC-TACATGGGACGTGAATGGGAAC 68811 Query 41583 TTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCG 41642 ||||||| || |||||||| | || ||||| || || || | ||| ||||| || || | Sbjct 68812 TTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTG 68871 Query 41643 CTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGC 41702 | || | ||| || ||| | |||| || | ||||| || || ||||||| ||||| Sbjct 68872 CAGCAAGTGCAGTATTCTTAATTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATGC 68931 Query 41703 CCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTC 41762 | || || || || || || ||||||| |||| | || ||||| || || ||||| |||| Sbjct 68932 CTTTAGGTATCTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTC 68991 Query 41763 TTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTG 41822 ||||||| || || || ||| ||||| || || || |||||||| ||| ||| || Sbjct 68992 TTATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGTG 69051 Query 41823 CTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGA-GGTTTCA 41881 | ||||||||| || || || || | || ||||| |||||||| ||| | Sbjct 69052 CAATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGTGA---AACTGAAGACGGTGTAT 69108 Query 41882 CAG--AACTATGGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTC 41939 | | ||||| |||||||| ||||| ||||| ||||| |||||||| || || ||||| | Sbjct 69109 CTGCTAACTACGGTTACAAATTTGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCAC 69168 Query 41940 ACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTC 41999 |||| || ||||| || | ||||||||||| || || || || || || ||| | | | Sbjct 69169 ACGGTTACTTTGGACGTTTAATCTTCCAATACGCAAGTTTCAACAACTCACGTGCTTTAC 69228 Query 42000 ATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTA 42059 | ||||| | ||||| ||||| ||||||||||| ||||| |||| ||||| | | Sbjct 69229 ACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGAATTAGCA 69288 Query 42060 CCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGAC 42119 | ||||| |||||||| || || |||||||| |||||||| | | | | | || | Sbjct 69289 CAATGGCATTCAACTTAAACGGATTCAACTTCAACCAATCAGTTGTTGATAGCCAAGGTC 69348 Query 42120 AGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGC 42179 ||||||||||| |||||||||||| | |||||||| | | || | || || |||| Sbjct 69349 GTGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATGC 69408 Query 42180 ATGAGCGGAACGCACACAACTTCCCGCTTGA 42210 | || || ||||| ||||||||||| || || Sbjct 69409 ACGAACGTAACGCGCACAACTTCCCTCTAGA 69439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146213212373536