Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_020866.1 Length=40231 Score E Sequences producing significant alignments: (Bits) Value seq469 111 4e-20 >seq469 Length=644 Score = 111 bits (122), Expect = 4e-20 Identities = 212/309 (69%), Gaps = 4/309 (1%) Strand=Plus/Plus Query 16367 AAGCATTCCGGATCCGCTTCGCATCTGGCTTCGAGATCCTCGCCCTCAGCTCTGCGCCGC 16426 |||| ||| |||||||||||| || || ||| || ||| || ||| | |||| Sbjct 187 AAGCCTTCTCGATCCGCTTCGCGTCGGGTTTCCGCATTACCGCGCTTCCCTCCGTCCCGC 246 Query 16427 GCGGGCTGCGCGGCAAGCAGGGTATGGTCATCATCGATGAGGCTGCCTTCGTCGATAGCC 16486 ||| | |||||||||||||||| || ||||||||||| ||||| || ||| | | | Sbjct 247 GCGCGTTGCGCGGCAAGCAGGGCATCGTCATCATCGACGAGGCGGCGTTCCACAAGAATG 306 Query 16487 TCGACGAGCTGCTCAAGGCCGCGCTCGCCTTCCTGATGTGGGGCGGGCAGGTGGTCGTAT 16546 | | ||| | ||||||| ||| | || || || || ||||| |||||||| || || Sbjct 307 TTGCCGAAGTAATCAAGGCGGCGATGGCGTTGCTAATCTGGGGTGGGCAGGTCGTTGTGA 366 Query 16547 GCTCGACGCATAACGGCACCGAAAACCCGTTCAACCAGGCGATCCAGGACATCCTCGCCG 16606 ||||| || |||||| || |||||||| | || |||||||| | | || Sbjct 367 TTTCGACCCACGACGGCATTTCGAATCCGTTCAATTTGCTCATTCAGGACAT-CAAGACG 425 Query 16607 GGC--GCTCGCCGCATCAACACATGCGGATCGATTTCGATCAGGCGCTGCGCGACGGACT 16664 ||| || ||||| ||| ||||||||| ||| | ||||| || |||||| Sbjct 426 GGCAAGCGCGCCG-GTCAGACGATGCGGATCACCTTCCGCGACGCGCTCGACGCCGGACT 484 Query 16665 ATACCAGCG 16673 || |||| Sbjct 485 CTATGAGCG 493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128616555303544