Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02-
18] 684 sequences; 27,589,342 total letters
Query= NC_020874.1
Length=46198
Score E
Sequences producing significant alignments: (Bits) Value
seq684 489 5e-134
>seq684
Length=114989
Score = 489 bits (542), Expect = 5e-134
Identities = 716/999 (72%), Gaps = 14/999 (1%)
Strand=Plus/Minus
Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936
||||| || || || ||||| || || ||||| |||||||| ||||| | || | | |
Sbjct 69445 GCTAAATCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCA 69386
Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCA--TTAAC-ATCTACTACT 25993
|| ||||| | | |||||||| || || | ||| | | || | ||| || |||
Sbjct 69385 GCACGGTTGATAATGTCAGCCCAAGT--GT-TGATCACACGACCTTGGCTATCAACAACT 69329
Query 25994 GACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTC 26053
|| ||||| ||||| || || |||| ||| ||||||||||||| || || | || ||
Sbjct 69328 GATTGGTTGAAGTTGAATCCGTTTAAGTTGAATGCCATTGTGCTAATTCCAAGAGCAGTT 69269
Query 26054 AGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTA 26113
| ||| || || ||||| ||||||| ||| | ||||| || | || ||| ||| ||
Sbjct 69268 AACCAGATACCTACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTG 69209
Query 26114 AAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATAT 26173
||||| || || || || ||||| | |||||||| ||||||||||| || || || ||
Sbjct 69208 AAACTTGCGTATTGGAAGATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAA 69149
Query 26174 GTCTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCT 26233
|| ||||| ||||| ||||| || || || || || || || | ||| |||||
Sbjct 69148 GTTTCTTCTTCTTGTCCAAATTTGTAACCGTAGTTAGCAGATACACCGTCTTCAGTTTCA 69089
Query 26234 -GCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAA 26292
| | ||| || | || || | | |||||||| ||| ||| | || |||||| ||
Sbjct 69088 CGGATTAAACTAG-ATGTTACAAGAGAACCGTGCATTGCACTGAATAAAGATCCACCAAA 69030
Query 26293 AACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAA 26352
|| |||||||||||||||||||||||||||||||| || || || ||||||||||||||
Sbjct 69029 CACACCAGCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAA 68970
Query 26353 TACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCC 26412
||| ||||| ||||| ||||||||||||||||| | |||||| |||||| || || ||
Sbjct 68969 TACTAACATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAGCTACC 68910
Query 26413 TTGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGC 26472
|||||||| || |||| |||||| ||||| ||||| | || ||| |||| | ||
Sbjct 68909 TTGTCCGATTGGGTAAATTAAGAATACTGCACTTGCTGCAGCTACTGGAGCTGAGAAAGC 68850
Query 26473 AACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTC-TCCC-TGCA 26530
|| || ||||| || | ||| |||| | ||| |||||||| | | |||| ||
Sbjct 68849 TACGAAAATCCAAGGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATG-- 68792
Query 26531 TATGCTGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTAT 26590
|| ||||| |||| ||||||||| || | | ||||| || || || || |||||
Sbjct 68791 TAGCAAGCTACACCTAATAAGAAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAA 68732
Query 26591 AGCCACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTA 26650
||||| ||||| | | |||||||||| | ||||| || || | || || ||||||
Sbjct 68731 AGCCATTCGTCTACAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCAATAGCGTTA 68672
Query 26651 GAGGAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACT 26710
|| || | || || |||| || || ||||||||||| | | || || | |||
Sbjct 68671 GAACTTGGAATAACCGCACCTGTGATAATGTTGTTTCCGTATAAAAGTGATCCAGCCACT 68612
Query 26711 GGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAAACAT 26770
|| ||||| || ||||| |||||||| || |||||||||||||| || | || || ||
Sbjct 68611 GGTTCACGGATACCATCGATATCTACTGGAGGTGCTGCGATGAAAGCGATGATGAAGCAG 68552
Query 26771 GTAGTGGCTGCGAGTAA-GCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACG 26829
| || |||| | ||| | |||| ||||| | || |||||||| || | || | |||
Sbjct 68551 CTTGTAGCTGTTAATAATGTAGGG-ATCATTAAAACACCGAACCAACCGATGTATAAACG 68493
Query 26830 GTTCTCAGTACTTGTAACCCACTCACAAAACCTCTCCCA 26868
||| || || || || | ||| || || | ||||||
Sbjct 68492 GTTTTCTGTGCTAGTGATCCAAGAGCAGAAGCGCTCCCA 68454
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 147710800209280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |