Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq684 581 9e-162 >seq684 Length=114989 Score = 581 bits (644), Expect = 9e-162 Identities = 740/1013 (73%), Gaps = 4/1013 (0%) Strand=Plus/Minus Query 40533 GCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAGACTC 40592 ||||| |||||||| |||||||| |||||||| |||||||||||||||||||||| | || Sbjct 69445 GCTAAATCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAA-TC 69387 Query 40593 TGT-CTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCG-TCTACTACTG 40650 | | ||| | || ||||||||||| || || ||| || || || || |||| Sbjct 69386 AGCACGGTTGATAATGTCAGCCCAAGTGTTGATCACACGACC-TTGGCTATCAACAACTG 69328 Query 40651 ACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGTAA 40710 | ||||| ||||| || || || | ||| || ||||| || || || | | || | Sbjct 69327 ATTGGTTGAAGTTGAATCCGTTTAAGTTGAATGCCATTGTGCTAATTCCAAGAGCAGTTA 69268 Query 40711 GCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGA 40770 ||| || || | ||| || ||||| | | |||||||||| ||||| ||||||| Sbjct 69267 ACCAGATACCTACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTGA 69208 Query 40771 ATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAG 40830 | || ||||| || |||| | ||||||||||||||||||||||||||||| |||| Sbjct 69207 AACTTGCGTATTGGAAGATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAAG 69148 Query 40831 TCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCC 40890 | || |||| || ||||| || || |||||||| ||| || || || || | Sbjct 69147 TTTCTTCTTCTTGTCCAAATTTGTAACCGTAGTTAGCAGATACACCGTCTTCAGTTTCAC 69088 Query 40891 GAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAAGA 40950 | || | || || ||||| |||||||| ||| || |||| |||||||| | Sbjct 69087 GGATTAAACTAGATGTTACAAGAGAACCGTGCATTGCACTGAATAAAGATCCACCAAACA 69028 Query 40951 CGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGA 41010 | || ||||| || |||||||||||||||||| ||||||||||||||||||||||| | Sbjct 69027 CACCAGCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAATA 68968 Query 41011 CAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCT 41070 | |||||||||||||| || ||| ||| ||||||||||||||||||||||| ||| | Sbjct 68967 CTAACATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAGCTACCTT 68908 Query 41071 GACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGCCA 41130 | |||| ||| |||| ||||||||| || ||||| | | |||||||| | | || | Sbjct 68907 GTCCGATTGGGTAAATTAAGAATACTGCACTTGCTGCAGCTACTGGAGCTGAGAAAGCTA 68848 Query 41131 CAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTATG 41190 | || ||||| || | ||| |||| | ||| ||||||||| | | || ||| Sbjct 68847 CGAAAATCCAAGGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATGTAGC 68788 Query 41191 CTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCC 41250 ||||| |||| ||| ||||| || || | ||||| || || || |||||||| |||| Sbjct 68787 AAGCTACACCTAATAAGAAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAAAGCC 68728 Query 41251 ACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGC 41310 | ||||| | | | |||||||| | ||||||||| || | || || |||||||| | Sbjct 68727 ATTCGTCTACAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCAATAGCGTTAGAAC 68668 Query 41311 TCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCT 41370 | |||| || || || | ||||| ||||| ||||| | | || || | || || | Sbjct 68667 TTGGAATAACCGCACCTGTGATAATGTTGTTTCCGTATAAAAGTGATCCAGCCACTGGTT 68608 Query 41371 CACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAAACATGTGG 41430 |||| || ||||| |||||||| || ||||||||||| || ||||| ||||| || | | Sbjct 68607 CACGGATACCATCGATATCTACTGGAGGTGCTGCGATGAAAGCGATGATGAAGCAGCTTG 68548 Query 41431 TAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGGTTGT 41490 |||| |||| ||||| || ||||||| ||||| |||||||| | ||||| ||||| | Sbjct 68547 TAGCTGTTAATAATGTAGGGATCATTAAAACACCGAACCAACCGATGTATAAACGGTTTT 68488 Query 41491 CGGTGCTAGTGACCCAGTTACAAAACTTCTCCCAGTTGGTAGTAGTGTCTCTT 41543 | |||||||||| ||| || || |||||| | ||||| | |||||| Sbjct 68487 CTGTGCTAGTGATCCAAGAGCAGAAGCGCTCCCATAAGCTAGTACTTTCTCTT 68435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143701232777256