Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq684 661 0.0 >seq684 Length=114989 Score = 661 bits (732), Expect = 0.0 Identities = 710/938 (76%), Gaps = 6/938 (1%) Strand=Plus/Minus Query 67368 TCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAGTCCTGCTCTG 67427 || |||||||||||||| |||||||| |||||||| |||||||| || | | || | | Sbjct 69439 TCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCAGCACGG 69380 Query 67428 TTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAACGACGGATTGG 67484 || | ||||| |||||||| ||||| || |||| | ||||| || |||||| Sbjct 69379 TTGATAATGTCAGCCCAAGTGTTGATCAC---ACGACCTTGGCTATCAACAACTGATTGG 69323 Query 67485 TTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCAGTGAACCAG 67544 ||||||||||| ||||| | |||||||||||| || | || | ||||| |||||| Sbjct 69322 TTGAAGTTGAATCCGTTTAAGTTGAATGCCATTGTGCTAATTCCAAGAGCAGTTAACCAG 69263 Query 67545 ATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAAGAT 67604 || | || || || | ||||| | ||||||||| | | | ||||||||||||| | Sbjct 69262 ATACCTACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTGAAACTT 69203 Query 67605 GCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCT 67664 || || |||||||| || || || ||||| || || ||||| || ||||||||||| ||| Sbjct 69202 GCGTATTGGAAGATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTTTCT 69143 Query 67665 TCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCTGATA 67724 ||||||||||| || |||||||||||||| || | || |||||| | ||| Sbjct 69142 TCTTCTTGTCCAAATTTGTAACCGTAGTTAGCAGATACACCGTCTTCAGTTTCACGGATT 69083 Query 67725 AGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCT 67784 | | ||| || ||||||||||||||||| ||||| || | || ||||| || ||||| Sbjct 69082 AAACTAGATGTTACAAGAGAACCGTGCATTGCACTGAATAAAGATCCACCAAACACACCA 69023 Query 67785 GCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAAC 67844 || || ||| ||||||||||||||||||||| |||||||| ||||||||||| || ||| Sbjct 69022 GCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAATACTAAC 68963 Query 67845 ATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCG 67904 ||| |||| ||||||||||| ||||| | |||||| | |||||||| |||||| ||| Sbjct 68962 ATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAGCTACCTTGTCCG 68903 Query 67905 AAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATGCTACACAG 67964 | || || | ||||| || || |||||||| |||||||| ||| | ||||| | Sbjct 68902 ATTGGGTAAATTAAGAATACTGCACTTGCTGCAGCTACTGGAGCTGAGAAAGCTACGAAA 68843 Query 67965 ATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACAGTATGCTGTG 68024 |||||||||||||| || | |||||| ||||||||| | ||| || ||| | Sbjct 68842 ATCCAAGGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATGTAGCAAGCT 68783 Query 68025 ATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATACAACCACTCA 68084 | || | | |||||| || |||||||||||| |||| ||||| || || | ||| || Sbjct 68782 ACACCTAATAAGAAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAAAGCCATTCG 68723 Query 68085 TCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAACTAGGA 68144 |||| || || |||||||| | || |||||||||| ||| || ||||| ||||| ||| Sbjct 68722 TCTACAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCAATAGCGTTAGAACTTGGA 68663 Query 68145 ACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACAGGTTCTCTG 68204 | ||| ||||| | || |||||||| ||||| | || || || || || ||||| | | Sbjct 68662 ATAACCGCACCTGTGATAATGTTGTTTCCGTATAAAAGTGATCCAGCCACTGGTTCACGG 68603 Query 68205 ATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCAAGTTGCTGCT 68264 |||||||||||||| |||||||||||||| ||||| || ||||||||||| ||| ||| Sbjct 68602 ATACCATCGATATCTACTGGAGGTGCTGCGATGAAAGCGATGATGAAGCAGCTTGTAGCT 68543 Query 68265 GCGAGCAAGCAAGGAATCATCAACACACCGAACCAACC 68302 | | || ||| ||||| || |||||||||||||| Sbjct 68542 GTTAATAATGTAGGGATCATTAAAACACCGAACCAACC 68505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566942352601440