Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq684 722 0.0 >seq684 Length=114989 Score = 722 bits (800), Expect = 0.0 Identities = 752/981 (77%), Gaps = 8/981 (1%) Strand=Plus/Minus Query 67849 TCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATACCCAAACCAGCGCGG 67908 || |||||||||||||| |||||||| || ||||| ||||||||||| ||| |||| ||| Sbjct 69439 TCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCAGCACGG 69380 Query 67909 TTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCAAGGATAGACTGGTTG 67968 |||| || ||| ||||| || | || ||| ||||||| | || |||||| Sbjct 69379 TTGATAATGTCAGCCCAAGTGTTGATCACACGACCTTGGCTATCAACAACTGATTGGTTG 69320 Query 67969 AAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGTGAACCAGATA 68028 |||||||| || || | |||||||||||| ||||||| ||||| ||||| ||||||||| Sbjct 69319 AAGTTGAATCCGTTTAAGTTGAATGCCATTGTGCTAATTCCAAGAGCAGTTAACCAGATA 69260 Query 68029 CCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGATGCA 68088 || || || ||||| ||||| | ||||||||| | | ||| ||||||||||| ||| Sbjct 69259 CCTACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTGAAACTTGCG 69200 Query 68089 TACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTAAGTCTCTTCT 68148 || |||||||| | ||| || ||||| || |||||||| || ||||||||||| |||||| Sbjct 69199 TATTGGAAGATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTTTCTTCT 69140 Query 68149 TCTTGACCGAACTTGTAACCATAGTT--CTGGGACTCAGT-TTCAGTGGTTTCACGAACC 68205 ||||| || || |||||||| ||||| | | || | || |||||| |||||| | Sbjct 69139 TCTTGTCCAAATTTGTAACCGTAGTTAGCAGATACACCGTCTTCAGT---TTCACGGATT 69083 Query 68206 AGTGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAATACGCCA 68265 | ||| || || || ||||| |||||||||||||| | |||||||||||| || ||| Sbjct 69082 AAACTAGATGTTACAAGAGAACCGTGCATTGCACTGAATAAAGATCCACCAAACACACCA 69023 Query 68266 GCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAACACCAGC 68325 ||||| || ||||||||| |||||||| || |||||||| ||||||||||| || | | Sbjct 69022 GCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAATACTAAC 68963 Query 68326 ATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACCTTGACCG 68385 ||| |||||||||||||||| || || | |||||| | |||||||| |||||| ||| Sbjct 68962 ATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAGCTACCTTGTCCG 68903 Query 68386 AAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGCAACACAG 68445 | || || | | ||| ||||| |||||| || || || || ||| | || || | Sbjct 68902 ATTGGGTAAATTAAGAATACTGCACTTGCTGCAGCTACTGGAGCTGAGAAAGCTACGAAA 68843 Query 68446 ATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCCATGTATGCAAAG 68505 |||||||||||||| || | ||| ||| |||||||||||||||||||||||| |||| Sbjct 68842 ATCCAAGGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATGTA-GCAAGC 68784 Query 68506 -ATACCAATCAGGAAGTGAAAGATTACGAGTTGGAAAGGACCACCATTGTACAACCACTC 68564 | ||| | | |||||| || | ||| |||||| |||||||||| ||||| | ||| || Sbjct 68783 TACACCTAATAAGAAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAAAGCCATTC 68724 Query 68565 ATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGCATTTGAACTAGG 68624 || | | || |||||||||| || || ||||||| |||||| || || ||||| || Sbjct 68723 GTCTACAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCAATAGCGTTAGAACTTGG 68664 Query 68625 AACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGCAACAGGTTCACG 68684 || ||| ||||| | || |||||||| || || | |||||| ||||| || |||||||| Sbjct 68663 AATAACCGCACCTGTGATAATGTTGTTTCCGTATAAAAGTGATCCAGCCACTGGTTCACG 68604 Query 68685 AATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAAACAGATGGTTGC 68744 ||||||||||| || || || || || |||||||| |||| |||||| ||| | || || Sbjct 68603 GATACCATCGATATCTACTGGAGGTGCTGCGATGAAAGCGATGATGAAGCAGCTTGTAGC 68544 Query 68745 TGCAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGTAAAGGCGGTTCTCTGT 68804 || | | ||||||||||| | || ||||||||||| | ||| | ||||| ||||| Sbjct 68543 TGTTAATAATGTAGGGATCATTAAAACACCGAACCAACCGATGTATAAACGGTTTTCTGT 68484 Query 68805 GGAAGTCACCCATTCGCAGAA 68825 | ||| | ||| |||||| Sbjct 68483 GCTAGTGATCCAAGAGCAGAA 68463 Score = 571 bits (632), Expect = 7e-158 Identities = 735/1009 (73%), Gaps = 4/1009 (0%) Strand=Plus/Minus Query 66585 TATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGT 66644 |||||||| || || ||||| || | ||| || |||||||||||||| |||||||| ||| Sbjct 38924 TATTAAAGGGCGTTTCCACGTGGTAAAACCTCCTCTGGGAATACAAAATTTTCATGTGGT 38865 Query 66645 TGATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAG 66704 || || | |||| ||||| | || |||||| || |||| || || || || ||| Sbjct 38864 TGGTCCTGTGCGGCCATCCATGATCTAATACCTTCGTTTAATAAGATATTTTTAGTATAG 38805 Query 66705 AACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCA 66764 || || || || ||||| ||||| ||||| | | |||||| |||||||||||||| || Sbjct 38804 AAAGTTTCAAATTCTGGATCTTCAGCTGCACGAAGCTCTTGAGATACAAAGTCATATGCT 38745 Query 66765 CGAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGA 66824 | | ||| | || | ||| | ||||| | ||||||||||| | ||| | || ||| Sbjct 38744 CTTAAGTTTAATGCTAAACCTACTATACCAAAAGAACTTGTCCATAAACCTGTTACTGGA 38685 Query 66825 ACAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGA 66884 ||||| ||||| |||||||| | ||| | || || ||| |||| |||||| || ||| Sbjct 38684 ACAAATAACATGAAGAAATGAAGCCAACGTTTGTTAGAAAAAGCAACACCAAAAATTTGA 38625 Query 66885 GACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAAT 66944 |||||||| | ||| || || |||||||| ||||||||||| ||| || | ||| Sbjct 38624 GACCAGAATCTGTTCGCTGTTACCATTGAATAAGTTTCTTCTGATTGTGTTGGTGTGAAA 38565 Query 66945 GCTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCA 67004 || ||| || || || ||||||||||| | | || || ||||| ||| | ||| Sbjct 38564 GCACGGAATGTATTCGCAGCATCACCATCTTCGAATAATGTGTTTTCTACAGTAGCTCCA 38505 Query 67005 TGAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGG 67064 ||||| ||||| | | ||||||||| | || ||||||||||||||||| || || || Sbjct 38504 TGAATTGCAGATAATAGTGCACCACCTAAAATTCCTGCTACACCCATCATGTGGAATGGA 38445 Query 67065 TTCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACC 67124 || | |||||||||||||| ||||||| ||| | |||||||| || || |||| || Sbjct 38444 TTAAGTGTCCAGTTATGGAAACCTTGTAAGAATAATAGGAATCGGAAAATAGCTGCAACT 38385 Query 67125 CCGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTA 67184 || ||| ||||| || |||||||| | ||| || | ||| ||||| | || ||| | Sbjct 38384 CCAAAACTAGGAGCAAAGAACCAACTTGCTTGTCCTAAAGGATAGATTAAGAATACAGAA 38325 Query 67185 ACAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGATACCGATGAGA 67244 || || || |||||||| || || || ||||| ||||| || ||||| ||||| | ||| Sbjct 38324 ACGAATACTGCGATAGGTCCTGAAAATGCAATTGCATTATACGGACGAATACCTACAAGA 38265 Query 67245 CGTGCCAGTTCAAACTGGCG-AAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGCGC 67303 || || | |||||| || || || || ||| ||||||| | || ||||| || | || Sbjct 38264 CGAGCAATTTCAAATTGTCGTAAACA-GAATCCAATTAATCCAAATGCCCCATGTAATGC 38206 Query 67304 CACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTCAGG 67363 |||||| |||| | ||| || | ||| | ||| || ||||| || || | ||| || Sbjct 38205 GACAAAAGTCCATAATCCACCTATTTGAAGCCAACGAGTAAAATCTCCTTGTGCCTCTGG 38146 Query 67364 ACCCCAAAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACAGCCGCTGT 67423 ||||| | || | | |||||||||||| || ||||| ||||| ||||| | || Sbjct 38145 TCCCCATAATAAGATCAATGAATGACCCATACTATTTGCAGGTGTTGATACAGCTACAGT 38086 Query 67424 GAGAAAATTAGCA-CCCTCAAGATAACTAGACGCGAGTCCGTGAGTGTACCAGCTTGTGA 67482 | || || ||| ||||| | ||| ||| || | ||| || |||||||| ||| | Sbjct 38085 TAAGAAGTT-GCATCCCTCTAAGTAAGAAGAAGCTAATCCATGTGTGTACCAAGATGTAA 38027 Query 67483 CAAACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATAAGCAGTGGGAAAAAGAAGTA 67542 |||| |||||||| || | ||| ||||||| ||| | | | || || ||||| | | | Sbjct 38026 CAAAAGTAGTACCTGTTAACCATCCACCAACTGCAAGAAATGCTGTTGGAAATAATAAAA 37967 Query 67543 GTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAAGCCAGTCATC 67591 | || |||||||| | ||| || || ||||||||||| | ||||||||| Sbjct 37966 GACCTGACCAACCAATAAATACGAAACGATCTCGTTTTAACCAGTCATC 37918 Score = 93.3 bits (102), Expect = 5e-14 Identities = 76/91 (84%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 35509 AACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGC 35568 ||||||||||| ||| ||||||| |||||||||| ||||||| |||| ||||| || | Sbjct 43166 AACTCCCCAGGCTGGACTTGAACCAGCGACCAATCGGTTAACAGCCGATTGCTCTACCAC 43225 Query 35569 TGAGCTACTGAGGATTGAGTT-TTTCTTGTT 35598 |||||||||||||||| | || | |||| || Sbjct 43226 TGAGCTACTGAGGATTTATTTATGTCTTATT 43256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572049508934880