Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq6 161 3e-34 seq29 96.9 1e-14 >seq6 Length=1241202 Score = 161 bits (178), Expect = 3e-34 Identities = 606/942 (64%), Gaps = 25/942 (3%) Strand=Plus/Minus Query 155592 GACGCCAGATTACATACCGCAGTCTCCTTGT-CGTCGCTGTATTCTACAATCTCACAGCA 155650 || ||||| || || ||||| ||| | | || || |||| || | ||||| ||| Sbjct 394386 GAGGCCAGGTTGCAGACCGCGACCTCATCGGGCGACG-TGTACTCGATGATCTCCGTGCA 394328 Query 155651 CAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATC 155710 ||| || || ||||||||||| || |||| |||||| ||||| ||| || || || Sbjct 394327 CAGATTGGATGATTTGATGGTGCCCAAGTTCTGCTGGTTTGATTTCAGGTTGCAGGCGTC 394268 Query 155711 CTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAG 155770 |||| | || ||||| || || |||||||||| ||| | |||||||||| | |||||| Sbjct 394267 CTTGAACAGCATGTAAGGCGTGCCTGTCTCCACCTGGGAGTCCAGAATCGCGAACCAGAG 394208 Query 155771 GTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCGT 155830 | |||| ||||| |||| ||| |||| |||| | || || |||| Sbjct 394207 CTGCTGGGCCTTAATAACCTTG-----CGTGCTTTCCCACTC--TTCTCGTAGCTGGCGT 394155 Query 155831 -----TCGGTAA--TCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAA 155883 | | ||| ||||| ||| | || ||| || ||||||| | |||||||| Sbjct 394154 AGAGCTGGTTAAACTCCTCGCCGCACACGTCCGCCAGGCCCGGGCACTCGTTGGGGCAAA 394095 Query 155884 ACAGCGACCAAATTTTATTACCGAT-TACACGCTC--CATAAATACATCACTCGCCCAAA 155940 | || ||||| | || | | ||||| | ||| || | || || ||| | Sbjct 394094 AAAGGGACCA---GTCCCCGTCGCTCTCCACGCGCCGCATGAACAGGTCGGGCGTCCAGA 394038 Query 155941 TAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTA 156000 || ||||| || || | ||| | ||| | |||||| ||||| || || || | Sbjct 394037 GGGCGTAGAACAGATCACGTGCACGCTCCAACTCGTTGCCGTGGTTCTTACGCAGGTCCA 393978 Query 156001 AGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCT 156060 |||||| || || | ||| ||||| || || || || || ||| || | || Sbjct 393977 GGAATTCAAAGATGTCTGCATGCCAGGGCTCTAGGTAGATGGCGAAGGAACCCTTGCGCT 393918 Query 156061 TG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAA 156117 || || ||||| || || || || || || | ||||| || | |||||||| | | Sbjct 393917 TGCCTCCGCCCTGGTCGACGTAGCGGGCCGTATCGTTGAAAACGCGGAGCATAGGTACGA 393858 Query 156118 TACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAA 156177 | || ||||| ||||| || | ||| ||||| | || | | |||| || || | Sbjct 393857 TGCCGTTGGAGGTGCCGTTCGATCCACGAATGTAGGAGTCTCGCGCCCGAATGTTGTGGA 393798 Query 156178 TATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGA 156237 | || ||||| ||||| | |||| ||||| |||||||| ||| | || | | Sbjct 393797 TGGATACGCCAATCCCACCCGCAAATTTGGAAATGGCAGCGCATTGCTTGAGGGTGTCGT 393738 Query 156238 AAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTC 156297 | || || || || || || || | ||| | || || |||| || | ||| || | Sbjct 393737 AGATGCCGTCGATGGAGTCCTCCTTCATGGTCAGGAGGAAGCAGGAGGAGAGTTGGGGCC 393678 Query 156298 GTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATAT 156357 | ||||| || || ||||| |||||||| || ||||| | ||| || ||||| Sbjct 393677 GCGGTGTGCCGGCATTGAAAAGTGTAGGCGTAGCATGCGTGAAAAGTTTGAGCGACATGA 393618 Query 156358 AATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCA 156417 || ||| |||||| | |||| || ||| |||| || | || | || Sbjct 393617 GATTGTAGGTCTCCAGCGCCGCGTCAATGTTCTCTTTGTGGATACCAATTGCCACACGCA 393558 Query 156418 TCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTT 156477 | ||| ||||| || ||||| | || || || | || |||||||| | || Sbjct 393557 TGATCATGTGCTGGGGGCGCTCCATAACTACCCCGTTCATCTTAAGAAGGTACGACTTTT 393498 Query 156478 CCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATCACGGT 156519 |||| |||||||| || || || ||| | ||| || |||| Sbjct 393497 CCAGCGTTTTAAAGCCAAAGTAGTCATAATCAAAGTCCCGGT 393456 >seq29 Length=316797 Score = 96.9 bits (106), Expect = 1e-14 Identities = 346/538 (64%), Gaps = 5/538 (1%) Strand=Plus/Plus Query 155592 GACGCCAGATTACATACCGCAGTCTCCTTGTCG-TCGCTGTATTCTACAATCTCACAGCA 155650 |||||||| || || ||||| ||| | || ||| |||||| || ||||| ||| Sbjct 130777 GACGCCAGGTTGCAGACCGCCACCTCTTCCGCGCTCG-TGTATTGGACGATCTCGGTGCA 130835 Query 155651 CAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATC 155710 ||| || || |||||||||||| || |||| ||||| || ||| ||||| || Sbjct 130836 CAGATTCGAGGACTTGATGGTGCCCAAGTTCTGTTGGTTGCTCTTCAGGTTGCAAGCGTC 130895 Query 155711 CTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAG 155770 |||||| || ||||| || || || ||||| ||||| | ||||| || | ||| | Sbjct 130896 CTTGTACAGCATGTAGGGCGTGCCCGTCTCAATCTGCGAGTCCAAGATGGCAAACCACAA 130955 Query 155771 GTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCGT 155830 ||| | ||| | | ||| ||| || ||| || || ||||| | ||| || Sbjct 130956 GTCCTGAGCACGCACTGTCTTCTTGACTCGGCCCTCTCGTTCGTATTTTAAATATAGGTC 131015 Query 155831 TCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGA 155890 ||| | ||| |||| || || || || ||||||| |||||| || | || || Sbjct 131016 CCGGAAGGCCTGGCCGTGGCAGTCCGCGAGACCGGGGCACTGATCGGGACACATGAGGGA 131075 Query 155891 CCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAA 155950 ||| | || | || | |||||| || | || ||| | ||||||| Sbjct 131076 CCAGGTCCCATCCTCCTCCACCCTCTCCATGAAGAGGTCGGGAATCCATAGTCCATAGAA 131135 Query 155951 AAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTC 156010 || |||| ||| | |||||| | ||||| |||||||| || || | | ||| Sbjct 131136 GAGATCCCGCGCCCGCGCCTCCTCCTTTCCGTGGTTCTTCCGCAGGTCCAGCACTTCAAA 131195 Query 156011 AATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACC 156067 || || | || |||||||| || || ||||| || ||||||| || || Sbjct 131196 GATGTCCGCGTGCCACGGCTCCAGGTAGATGGCAAAGGCCCCTGGCCTCTTGCCTCCCCC 131255 Query 156068 CTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTG 156125 ||| || || || || || || | |||||| | ||||| || | | ||| ||| Sbjct 131256 CTGGTCCACGTAGCGCGCCGTGACGTCGAAGACCCTGAGCATGGGCACCAGACCGTTG 131313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471804701358508