Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02-
18] 684 sequences; 27,589,342 total letters
Query= NC_021530.1
Length=171407
Score E
Sequences producing significant alignments: (Bits) Value
seq684 726 0.0
>seq684
Length=114989
Score = 726 bits (804), Expect = 0.0
Identities = 738/955 (77%), Gaps = 10/955 (1%)
Strand=Plus/Plus
Query 157607 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACC 157666
||||| | || ||||||||||||| || | ||||| || || | || |||| ||
Sbjct 68490 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCTACATTATTAACAGCTACA 68549
Query 157667 ATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAA 157726
| ||| |||||| |||| ||| |||| || || || || || ||||| || |||||||||
Sbjct 68550 AGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAA 68609
Query 157727 CCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCT 157786
|| || ||||| ||||| | || || |||||||| ||| | ||||| ||| | ||| |
Sbjct 68610 CCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCGGTTATTCCAAGT 68669
Query 157787 TCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGG 157846
|| ||||| |||||| |||||||||| || | |||||||| || || | || || |||
Sbjct 68670 TCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGG 68729
Query 157847 CTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTTCCTCATTG--GTATCTATG 157904
|| || ||||||||||||| |||||| |||||||| |||||| | | | ||| || ||
Sbjct 68730 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCT-TG 68788
Query 157905 CATACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTG 157964
| |||||||||||||| ||||||||| ||||||||||| ||||| || ||||| | |
Sbjct 68789 C-TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCG 68847
Query 157965 TAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTC 158024
|||| | || |||||||| ||||||||| ||| |||||| | | || || |||| |
Sbjct 68848 TAGCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCAGTATTCTTAATTTACCCAATCGGAC 68907
Query 158025 AAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTG 158084
||||| ||||| |||| ||||||| | ||||||||||||||||| |||| |||| | |
Sbjct 68908 AAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCATGTTAG 68967
Query 158085 TATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGG 158144
|||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||| |
Sbjct 68968 TATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTG 69027
Query 158145 TATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTC 158204
| || ||||||||| | ||| ||| |||||||| ||| || || || | | |
Sbjct 69028 TGTTTGGTGGATCTTTATTCAGTGCAATGCACGGTTCTCTTGTAACATCTAGTTTAATCC 69087
Query 158205 GTGAAACGACTGAA-ACAGAGTCACAG--AACTACGGTTACAAGTTCGGTCAAGAGGAAG 158261
||||| |||||| || | || | | |||||||||||||| || || ||||| ||||
Sbjct 69088 GTGAA---ACTGAAGACGGTGTATCTGCTAACTACGGTTACAAATTTGGACAAGAAGAAG 69144
Query 158262 AGACCTATAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTT 158321
| || || |||||||| || ||||| || ||||| || ||||| ||||||||||||||
Sbjct 69145 AAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCAA 69204
Query 158322 CATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCT 158381
||||||||||| ||| | || ||||||||| | ||||| ||||| ||||| || ||||
Sbjct 69205 GTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCT 69264
Query 158382 GGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACC 158441
|||| || || ||||| | ||| |||||||||||| | ||||| |||||||||||||
Sbjct 69265 GGTTAACTGCTCTTGGAATTAGCACAATGGCATTCAACTTAAACGGATTCAACTTCAACC 69324
Query 158442 AGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCG 158501
| || | ||||| | || ||||||||| | ||||| ||||| || | | ||||| |
Sbjct 69325 AATCAGTTGTTGATAGCCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCAACCGTG 69384
Query 158502 CTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGA 158556
||| | | ||||||||||| ||||| || |||||||| ||||||||||| || ||
Sbjct 69385 CTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGA 69439
Score = 517 bits (572), Expect = 1e-141
Identities = 726/1014 (72%), Gaps = 4/1014 (0%)
Strand=Plus/Plus
Query 159304 TCGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGACTACTACTTC 159363
||||||||||| | ||||||||||| || || ||| | || ||||| || || || |
Sbjct 37916 TCGATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGTCTTTTATTAT 37975
Query 159364 TTCCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTT 159423
|||| || || | ||| || |||| || ||| | || || || |||||||||| ||
Sbjct 37976 TTCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTTGTTACATCTT 38035
Query 159424 GGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGG-TGCTAACTTTCTCACAGCAGCT 159482
||||||| || || | ||| ||| || | ||||| ||| ||||| | || | ||||
Sbjct 38036 GGTACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGC-AACTTCTTAACTGTAGCT 38094
Query 159483 GTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 159542
|| || || ||||| | |||||||||||| | | || | ||||| || ||| |
Sbjct 38095 GTATCAACACCTGCAAATAGTATGGGTCATTCATTGATCTTATTATGGGGACCAGAGGCA 38154
Query 159543 CAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGATTATGGAATTTTGTGGCACTCCAC 159602
|| || |||| || ||| ||| | || |||||||||| |||||| ||| | ||
Sbjct 38155 CAAGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTTGTCGCATTACAT 38214
Query 159603 GGTGCCTTCGCCCTAATTGGTTTCATGCTCCGTCAGTTTGAACTGGCACGTCTCATTGGT 159662
|| || || | ||||||| ||| | || || |||||| | || ||||| | |||
Sbjct 38215 GGGGCATTTGGATTAATTGGATTCTGTTTACGACAATTTGAAATTGCTCGTCTTGTAGGT 38274
Query 159663 ATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTC 159722
|| ||||| || ||||| ||||| || || || ||||| || || || || || |||
Sbjct 38275 ATTCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATTCGTTTCTGTATTC 38334
Query 159723 CTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCA 159782
| ||||| || || || || | |||||||| || ||||| ||||| || |||||
Sbjct 38335 TTAATCTATCCTTTAGGACAAGCAAGTTGGTTCTTTGCTCCTAGTTTTGGAGTTGCAGCT 38394
Query 159783 ATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTTCCAT 159842
|| || ||||||| || ||| | ||||| || || |||||||| | ||||| |||||
Sbjct 38395 ATTTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCAC 38454
Query 159843 ATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTCAGTGCCATCCATGGCGTTACT 159902
|||||||| || || || || ||||||| |||||| | ||| || ||||| | ||||
Sbjct 38455 ATGATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCTGCAATTCATGGAGCTACT 38514
Query 159903 GTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCA 159962
||||| |||||| | | |||||||| || || ||||| || || || ||
Sbjct 38515 GTAGAAAACACATTATTCGAAGATGGTGATGCTGCGAATACATTCCGTGCTTTCACACCA 38574
Query 159963 ACTCAAGAGGAGGAGACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTC 160022
|| ||| || || ||||| || ||||| || || ||| | |||||||| || || ||
Sbjct 38575 ACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAACAGATTCTGGTCTCAAATTTTT 38634
Query 160023 GGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTCATGTTGTTTGTGCCTGTTATG 160082
||| |||| ||||||||||| || |||||||||||||||||||| ||||| || || |
Sbjct 38635 GGTGTTGCTTTTTCTAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCAGTAACA 38694
Query 160083 GGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTTAATCTT-CGTGCTTACGA 160141
||| | |||||| ||| |||| || | || | || |||| ||| | || || ||
Sbjct 38695 GGTTTATGGACAAGTTCTTTTGGTATAGTAGGTTTAGC-ATTAAACTTAAGAGCATATGA 38753
Query 160142 TTTCGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAA 160201
|| ||| ||||||| | | ||||| ||||||||||||||||| || ||||| || ||
Sbjct 38754 CTTTGTATCTCAAGAGCTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTATACTAA 38813
Query 160202 AAACATCCTATTGAACGAAGGACTACGTGCATGGTTGGCACCTGCTGATCAACCCCATGA 160261
||| ||| |||| |||||||| | | ||||| |||| | || ||||| |||||
Sbjct 38814 AAATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAGGACCAACCACATGA 38873
Query 160262 AAACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAATAAAG 160315
||| ||| | |||||||| || || || || | || |||||||||||||| ||
Sbjct 38874 AAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAATAGAG 38927
Score = 122 bits (134), Expect = 1e-22
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 158735 TGTGAAGAGGATCAATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTAC 158794
||||| || ||| |||||||| |||| || ||||||||| ||| |||| | |||
Sbjct 18869 TGTGATGACGATGAATACATTTTAGATGCTGCAGAAGAAAACGGATTTGAACTACCTTAT 18928
Query 158795 TCTTGTCGTGCTGGTGCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGAT 158854
|||||| | ||||| |||| || | |||||||| | ||| ||| || |||||
Sbjct 18929 TCTTGTAGATCTGGTTCTTGTTCAACTTGTGCAGGACGTGTAGTAGGTGGTACAATTGAT 18988
Query 158855 CAGAGTGATCAGTCGTTCTTAGACGATGATCAGATTGCAGCAGGATTTGTTCTTACGTGT 158914
|| || |||||||| ||||| || ||||| |||||| |||||| || | || |||
Sbjct 18989 CAATCAGAACAGTCGTTTTTAGAAGACGATCAAGTTGCAGAAGGATTCGTATTAACTTGT 19048
Query 158915 GTAGCATATCCAACATCTGATTGTGTTGTTGTTACTGATCAAGAGGA 158961
|| || ||||| ||||||||||| || | || ||||||| ||
Sbjct 19049 GTTGCTTATCCCGCATCTGATTGTCAAATTTTAACAAATCAAGAAGA 19095
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548369711398880
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