Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq684 726 0.0 >seq684 Length=114989 Score = 726 bits (804), Expect = 0.0 Identities = 738/955 (77%), Gaps = 10/955 (1%) Strand=Plus/Plus Query 157607 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACC 157666 ||||| | || ||||||||||||| || | ||||| || || | || |||| || Sbjct 68490 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCTACATTATTAACAGCTACA 68549 Query 157667 ATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAA 157726 | ||| |||||| |||| ||| |||| || || || || || ||||| || ||||||||| Sbjct 68550 AGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAA 68609 Query 157727 CCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCT 157786 || || ||||| ||||| | || || |||||||| ||| | ||||| ||| | ||| | Sbjct 68610 CCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCGGTTATTCCAAGT 68669 Query 157787 TCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGG 157846 || ||||| |||||| |||||||||| || | |||||||| || || | || || ||| Sbjct 68670 TCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGG 68729 Query 157847 CTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTTCCTCATTG--GTATCTATG 157904 || || ||||||||||||| |||||| |||||||| |||||| | | | ||| || || Sbjct 68730 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCT-TG 68788 Query 157905 CATACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTG 157964 | |||||||||||||| ||||||||| ||||||||||| ||||| || ||||| | | Sbjct 68789 C-TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCG 68847 Query 157965 TAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTC 158024 |||| | || |||||||| ||||||||| ||| |||||| | | || || |||| | Sbjct 68848 TAGCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCAGTATTCTTAATTTACCCAATCGGAC 68907 Query 158025 AAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTG 158084 ||||| ||||| |||| ||||||| | ||||||||||||||||| |||| |||| | | Sbjct 68908 AAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCATGTTAG 68967 Query 158085 TATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGG 158144 |||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||| | Sbjct 68968 TATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTG 69027 Query 158145 TATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTC 158204 | || ||||||||| | ||| ||| |||||||| ||| || || || | | | Sbjct 69028 TGTTTGGTGGATCTTTATTCAGTGCAATGCACGGTTCTCTTGTAACATCTAGTTTAATCC 69087 Query 158205 GTGAAACGACTGAA-ACAGAGTCACAG--AACTACGGTTACAAGTTCGGTCAAGAGGAAG 158261 ||||| |||||| || | || | | |||||||||||||| || || ||||| |||| Sbjct 69088 GTGAA---ACTGAAGACGGTGTATCTGCTAACTACGGTTACAAATTTGGACAAGAAGAAG 69144 Query 158262 AGACCTATAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTT 158321 | || || |||||||| || ||||| || ||||| || ||||| |||||||||||||| Sbjct 69145 AAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCAA 69204 Query 158322 CATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCT 158381 ||||||||||| ||| | || ||||||||| | ||||| ||||| ||||| || |||| Sbjct 69205 GTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCT 69264 Query 158382 GGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACC 158441 |||| || || ||||| | ||| |||||||||||| | ||||| ||||||||||||| Sbjct 69265 GGTTAACTGCTCTTGGAATTAGCACAATGGCATTCAACTTAAACGGATTCAACTTCAACC 69324 Query 158442 AGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCG 158501 | || | ||||| | || ||||||||| | ||||| ||||| || | | ||||| | Sbjct 69325 AATCAGTTGTTGATAGCCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCAACCGTG 69384 Query 158502 CTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGA 158556 ||| | | ||||||||||| ||||| || |||||||| ||||||||||| || || Sbjct 69385 CTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGA 69439 Score = 517 bits (572), Expect = 1e-141 Identities = 726/1014 (72%), Gaps = 4/1014 (0%) Strand=Plus/Plus Query 159304 TCGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGACTACTACTTC 159363 ||||||||||| | ||||||||||| || || ||| | || ||||| || || || | Sbjct 37916 TCGATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGTCTTTTATTAT 37975 Query 159364 TTCCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTT 159423 |||| || || | ||| || |||| || ||| | || || || |||||||||| || Sbjct 37976 TTCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTTGTTACATCTT 38035 Query 159424 GGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGG-TGCTAACTTTCTCACAGCAGCT 159482 ||||||| || || | ||| ||| || | ||||| ||| ||||| | || | |||| Sbjct 38036 GGTACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGC-AACTTCTTAACTGTAGCT 38094 Query 159483 GTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 159542 || || || ||||| | |||||||||||| | | || | ||||| || ||| | Sbjct 38095 GTATCAACACCTGCAAATAGTATGGGTCATTCATTGATCTTATTATGGGGACCAGAGGCA 38154 Query 159543 CAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGATTATGGAATTTTGTGGCACTCCAC 159602 || || |||| || ||| ||| | || |||||||||| |||||| ||| | || Sbjct 38155 CAAGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTTGTCGCATTACAT 38214 Query 159603 GGTGCCTTCGCCCTAATTGGTTTCATGCTCCGTCAGTTTGAACTGGCACGTCTCATTGGT 159662 || || || | ||||||| ||| | || || |||||| | || ||||| | ||| Sbjct 38215 GGGGCATTTGGATTAATTGGATTCTGTTTACGACAATTTGAAATTGCTCGTCTTGTAGGT 38274 Query 159663 ATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTC 159722 || ||||| || ||||| ||||| || || || ||||| || || || || || ||| Sbjct 38275 ATTCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATTCGTTTCTGTATTC 38334 Query 159723 CTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCA 159782 | ||||| || || || || | |||||||| || ||||| ||||| || ||||| Sbjct 38335 TTAATCTATCCTTTAGGACAAGCAAGTTGGTTCTTTGCTCCTAGTTTTGGAGTTGCAGCT 38394 Query 159783 ATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTTCCAT 159842 || || ||||||| || ||| | ||||| || || |||||||| | ||||| ||||| Sbjct 38395 ATTTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCAC 38454 Query 159843 ATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTCAGTGCCATCCATGGCGTTACT 159902 |||||||| || || || || ||||||| |||||| | ||| || ||||| | |||| Sbjct 38455 ATGATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCTGCAATTCATGGAGCTACT 38514 Query 159903 GTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCA 159962 ||||| |||||| | | |||||||| || || ||||| || || || || Sbjct 38515 GTAGAAAACACATTATTCGAAGATGGTGATGCTGCGAATACATTCCGTGCTTTCACACCA 38574 Query 159963 ACTCAAGAGGAGGAGACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTC 160022 || ||| || || ||||| || ||||| || || ||| | |||||||| || || || Sbjct 38575 ACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAACAGATTCTGGTCTCAAATTTTT 38634 Query 160023 GGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTCATGTTGTTTGTGCCTGTTATG 160082 ||| |||| ||||||||||| || |||||||||||||||||||| ||||| || || | Sbjct 38635 GGTGTTGCTTTTTCTAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCAGTAACA 38694 Query 160083 GGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTTAATCTT-CGTGCTTACGA 160141 ||| | |||||| ||| |||| || | || | || |||| ||| | || || || Sbjct 38695 GGTTTATGGACAAGTTCTTTTGGTATAGTAGGTTTAGC-ATTAAACTTAAGAGCATATGA 38753 Query 160142 TTTCGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAA 160201 || ||| ||||||| | | ||||| ||||||||||||||||| || ||||| || || Sbjct 38754 CTTTGTATCTCAAGAGCTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTATACTAA 38813 Query 160202 AAACATCCTATTGAACGAAGGACTACGTGCATGGTTGGCACCTGCTGATCAACCCCATGA 160261 ||| ||| |||| |||||||| | | ||||| |||| | || ||||| ||||| Sbjct 38814 AAATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAGGACCAACCACATGA 38873 Query 160262 AAACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAATAAAG 160315 ||| ||| | |||||||| || || || || | || |||||||||||||| || Sbjct 38874 AAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAATAGAG 38927 Score = 122 bits (134), Expect = 1e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 158735 TGTGAAGAGGATCAATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTAC 158794 ||||| || ||| |||||||| |||| || ||||||||| ||| |||| | ||| Sbjct 18869 TGTGATGACGATGAATACATTTTAGATGCTGCAGAAGAAAACGGATTTGAACTACCTTAT 18928 Query 158795 TCTTGTCGTGCTGGTGCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGAT 158854 |||||| | ||||| |||| || | |||||||| | ||| ||| || ||||| Sbjct 18929 TCTTGTAGATCTGGTTCTTGTTCAACTTGTGCAGGACGTGTAGTAGGTGGTACAATTGAT 18988 Query 158855 CAGAGTGATCAGTCGTTCTTAGACGATGATCAGATTGCAGCAGGATTTGTTCTTACGTGT 158914 || || |||||||| ||||| || ||||| |||||| |||||| || | || ||| Sbjct 18989 CAATCAGAACAGTCGTTTTTAGAAGACGATCAAGTTGCAGAAGGATTCGTATTAACTTGT 19048 Query 158915 GTAGCATATCCAACATCTGATTGTGTTGTTGTTACTGATCAAGAGGA 158961 || || ||||| ||||||||||| || | || ||||||| || Sbjct 19049 GTTGCTTATCCCGCATCTGATTGTCAAATTTTAACAAATCAAGAAGA 19095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548369711398880