Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq684 612 2e-170 >seq684 Length=114989 Score = 612 bits (678), Expect = 2e-170 Identities = 745/1002 (74%), Gaps = 20/1002 (2%) Strand=Plus/Plus Query 72255 CACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCATGTCTTCTAAC 72314 ||| || || || | ||| | |||||||| ||||| ||||||||||| | |||| Sbjct 68483 CACAGAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCTACATTATTAAC 68542 Query 72315 TGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAAT 72374 ||| | || ||||| | || |||||||| || |||||||| |||||||| || || Sbjct 68543 AGCTACAAGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTAT 68602 Query 72375 CAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGT 72434 | | |||||||| || || || | ||||| || |||||||| ||| | ||||| || | Sbjct 68603 CCGTGAACCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCGGTTAT 68662 Query 72435 TCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGA 72494 |||| ||| ||||| || || | |||||||| || | |||||||| || || | || Sbjct 68663 TCCAAGTTCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGA 68722 Query 72495 CGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATT-GGAA 72553 ||| ||| | || ||||| ||||||||||| | || | || ||||| |||||| || Sbjct 68723 CGAATGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTT-CTTATTAGGTG 68781 Query 72554 TCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGA 72613 | || ||||||||| | | |||||||| ||| | |||| ||| | ||||||| Sbjct 68782 TAGCTTGCTACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGA 68841 Query 72614 TATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCAT 72673 | | ||||| | |||||| || ||| |||||||| |||||||||| | | || ||| Sbjct 68842 TTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCAGTATTCTTAATTTACCCAA 68901 Query 72674 TCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCA 72733 |||| || ||| ||||||||||||||||| |||||||||| ||||| |||||||||| Sbjct 68902 TCGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCA 68961 Query 72734 TGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAG 72793 |||| || |||||||||||||||||||| || |||||||| ||||||||||| ||||| | Sbjct 68962 TGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTG 69021 Query 72794 CAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCACTTGTTACTTCATCTC 72853 | ||| |||| ||||| | | |||||||||||||||||||| ||||| || || | Sbjct 69022 CTGGTGTGTTTGGTGGATCTTTATTCAGTGCAATGCACGGTTCTCTTGTAACATCTAGTT 69081 Query 72854 TAATCAGAGAGACAACAG-AGAACGAGAGTC--AAAACTACGGCTATAAGTTCGGACAAG 72910 ||||| | || ||| | ||| | | || |||||||| || || || ||||||| Sbjct 69082 TAATCCGTGA---AACTGAAGACGGTGTATCTGCTAACTACGGTTACAAATTTGGACAAG 69138 Query 72911 AAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGT 72970 |||||||||| || ||||| || ||||| || || ||||| || | ||||||||||| | Sbjct 69139 AAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAAT 69198 Query 72971 ATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCT 73030 | ||| ||||||||||| ||| | |||||||||||| | |||| | || || || Sbjct 69199 ACGCAAGTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAG 69258 Query 73031 GTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACT 73090 || | |||||||| | | || || | ||||||||||||||| | ||||||||||||| Sbjct 69259 GTATCTGGTTAACTGCTCTTGGAATTAGCACAATGGCATTCAACTTAAACGGATTCAACT 69318 Query 73091 TCAACCAATCAGTTGTAGAT-GCAAACGGAAAGATTGTACCAACA--TGGGGAGATGTTC 73147 |||||||||||||||| ||| || || | | || | ||||| |||| || || Sbjct 69319 TCAACCAATCAGTTGTTGATAGCCAA--GGTCGTGTG-ATCAACACTTGGGCTGACATTA 69375 Query 73148 TTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCAC 73207 | ||| | || | | || |||||||| ||||| ||| | || || ||||||||||| | Sbjct 69376 TCAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTC 69435 Query 73208 TAGACCTAGC---ATCTGCTGAGTCTACAACAGTTGCATTAA 73246 |||| |||| |||| || ||| | |||||||||||| Sbjct 69436 TAGATTTAGCGGTATCTAATG-TTCTTC--CAGTTGCATTAA 69474 Score = 598 bits (662), Expect = 5e-166 Identities = 768/1048 (73%), Gaps = 41/1048 (4%) Strand=Plus/Plus Query 73364 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 73423 |||||| | | ||||| |||||||| |||||||||||||||| || || ||||| ||| Sbjct 37906 TTTGACTTAGTCGATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGT 37965 Query 73424 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 73483 |||||| | || || || | || ||| | || || ||||| ||| |||||||| Sbjct 37966 CTTTTATTATTTCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTT 38025 Query 73484 GTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTTTTTA 73543 || || || |||||||||||||| | || || || || | |||||| || || ||| Sbjct 38026 GTTACATCTTGGTACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGCAACTTCTTA 38085 Query 73544 ACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTG---TTCCTTTGG 73600 |||| ||| ||||||||||||| || |||||||||| || |||| || | ||| Sbjct 38086 ACTGTAGCTGTATCAACACCTGCAAATAGTATGGGTCAT--TC-ATTGATCTTATTATGG 38142 Query 73601 GGACCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTT 73660 ||||||||||||||||||||| || || ||| ||||| |||||||| |||||| ||| Sbjct 38143 GGACCAGAGGCACAAGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTT 38202 Query 73661 GTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTA-GACAGTTTGAGATTGC 73719 || ||||||||||| | |||||| | || || ||| || ||| |||| ||||| ||||| Sbjct 38203 GTCGCATTACATGGGGCATTTGGATTAATTGGATTC-TGTTTACGACAATTTGAAATTGC 38261 Query 73720 AGGACTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCGCAGTATT 73779 | ||||| || || ||||| || || ||| | || ||||||| | |||||||||||| Sbjct 38262 TCGTCTTGTAGGTATTCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATT 38321 Query 73780 CACGAGCATCT---TTC-TAATATATCCTTTAGGAC-AGCATAGTTGGTTCTTCGCACCT 73834 | | ||| ||| |||| ||||||||||||| |||| ||||||||||| || ||| Sbjct 38322 C----GTTTCTGTATTCTTAATCTATCCTTTAGGACAAGCA-AGTTGGTTCTTTGCTCCT 38376 Query 73835 TCATTCGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATA 73894 || || || ||||| || || || | | |||||| |||| |||||||| || Sbjct 38377 AGTTTTGGAGTTGCAGCTATTTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGG 38436 Query 73895 ACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGT 73954 || ||||||||||| || ||||||||||||||||| || | ||||| ||| || ||| | Sbjct 38437 ACACTTAATCCATTCCACATGATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCT 38496 Query 73955 GCCATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAA 74014 || || ||||| || || ||| | |||||||| | ||| || Sbjct 38497 GCAATTCATGGAGCTACTGTAGAAAACACATTATTCGAA------------------GAT 38538 Query 74015 GGTAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAGACTTAT 74074 ||| ||| | | | || ||| | || ||| || ||||| |||||| |||||| Sbjct 38539 GGT--GATGC-TGCGAATACATTCCGTGCTTTCACACCAACACAATCAGAAGAAACTTAT 38595 Query 74075 AGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAA 74134 ||| | || || |||||||||||||| || || |||||| | || ||||| |||||| Sbjct 38596 TCAATGGTAACAGCGAACAGATTCTGGTCTCAAATTTTTGGTGTTGCTTTTTCTAACAAA 38655 Query 74135 AGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATA 74194 | | | || ||| | ||||| || || || || | ||| | |||||| ||| | Sbjct 38656 CGTTGGCTTCATTTCTTCATGTTATTTGTTCCAGTAACAGGTTTATGGACAAGTTCTTTT 38715 Query 74195 GGTATCGTAGGTCTAGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGA 74254 ||||| |||||| ||||| | ||| | |||||||| |||||||||||||||||| | | Sbjct 38716 GGTATAGTAGGTTTAGCATTAAACTTAAGAGCATATGACTTTGTATCTCAAGAGCTTCGT 38775 Query 74255 GCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTT-AATGAAGG 74313 ||||| ||||| ||||| |||||||| ||||| ||||| || | |||| || || ||||| Sbjct 38776 GCAGCTGAAGATCCAGAATTTGAAACTTTCTATACTAAAAATA-TCTTATTAAACGAAGG 38834 Query 74314 TATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGA 74373 ||| ||| |||||||| | | || ||||| ||||| || ||||| |||||||| || Sbjct 38835 TATTAGATCATGGATGGCCGCACAGGACCAACCACATGAAAATTTTGTATTCCCAGAGGA 38894 Query 74374 AGTCTTGCCACGAGGCAACGCACTATAA 74401 || || ||||| || ||||| || ||| Sbjct 38895 GGTTTTACCACGTGGAAACGCCCTTTAA 38922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572868701930720