Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq29 212 8e-49 seq6 170 2e-36 seq16 113 6e-19 seq26 109 7e-18 seq4 104 3e-16 >seq29 Length=316797 Score = 212 bits (234), Expect = 8e-49 Identities = 370/534 (69%), Gaps = 21/534 (4%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||| ||||||||||||||| ||| ||||| | |||||||||||| || |||||| Sbjct 131256 CTGGTCCACGTAGCGCGCCGTGACGTCGAAGACCCTGAGCATGGGCACCAGACCGTTG-- 131313 Query 1630125 CTCG--CCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAG 1630182 |||| || || |||||| | |||||||||| ||||| | ||||| | | | | Sbjct 131314 CTCGTCCCCTTCGTGCCCTTAATGTAGGCGCCGTGCGCGCGGATGTTGTGGACCGAGAGG 131373 Query 1630183 CCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCC 1630242 ||||| || || |||| |||| || | |||||||| || |||||||||||||| || Sbjct 131374 CCGATTCCCCCCGCCGCCTTGCTTATCACGGCGCACTGCTTCAGCGTGTCGTAGATACCA 131433 Query 1630243 TCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTG 1630302 |||||||||| || | |||| ||| ||| |||||||| || | |||||| |||| Sbjct 131434 ACGATCGAGTCCGCTTGCATGGCCAGGAGGAAGCACGAGGACATCTGCGGGAAACGCGTG 131493 Query 1630303 CCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAAC-TGCCGCGACATGGCGTCGTA 1630361 || |||| ||| || || || | || | ||||| || || || |||| ||||| Sbjct 131494 CCCGCGTGGAAAAGAGTAGGGGAGGCGTGGATGAACCACTTGTTGC-TCATGAGCTCGTA 131552 Query 1630362 GGTGGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGC 1630421 ||| | | | ||| || || ||| || |||| | || | ||| Sbjct 131553 GGTCTCCA--AGGCG-GCGGGCAGATCCTC------------TCCATGGATACCAAGGGC 131597 Query 1630422 GACGCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTA 1630481 ||||||| ||||||||||| || ||||| || || || | | ||| || ||| Sbjct 131598 AACGCGCAGAAGCATGTACTGCGGGCGCTCCACCACCTTGCGCCCGATCTTCAGCAAGTA 131657 Query 1630482 GGACCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGAT 1630541 || || |||||| ||| ||| || ||| |||| | ||||||| ||||| |||| Sbjct 131658 GGCTCGTTCCATGGTTTTGAAGCCGAAATAGTCAAAGAAATAATCGCGCTCGTGTCGGAC 131717 Query 1630542 GGCGGCGTCGAGGGCATCGCGGTGCGCGGCGACAAAGGCCACCAACTCGTCCGA 1630595 ||| ||||| |||| || ||| || ||||||| |||| || ||| || || Sbjct 131718 GGCCGCGTCTAGGGTGGGGCCGTGGGCCGCGACAAGCGCCATCACCTCCTCGGA 131771 Score = 145 bits (160), Expect = 9e-29 Identities = 295/442 (67%), Gaps = 10/442 (2%) Strand=Plus/Plus Query 1628164 TGGACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTG 1628223 |||||||||||||||||||| || | ||| | | || |||| |||||| |||||| | Sbjct 130819 TGGACGATCTCGGTGCACAGATTCGAGGACTTGATGGTGCCCAAGTTCTGTTGGTTGCTC 130878 Query 1628224 GTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCG 1628283 |||||||| |||||||||| ||||||||||||| ||| ||||| ||||||| | Sbjct 130879 TTCAGGTTGCAAGCGTCCTTGTACAGCATGTAGGGCGTGCCCGTCTCAATCTGCGAGTCC 130938 Query 1628284 ACGATGGCCGACCAGATCTGGCGCGCGGGCACG-ACAGTCCGC---GCGCGGCCCTNNNN 1628339 | |||||| |||| | | | | ||||| || ||| | | ||||||| Sbjct 130939 AAGATGGCAAACCACAAGT----CCTGAGCACGCACTGTCTTCTTGACTCGGCCCTCTCG 130994 Query 1628340 NNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCGC 1628399 |||||| ||||| ||| || || ||||| Sbjct 130995 TTCGTATTTTAAATATAGGTCCCGGAAGGCCTGGCCGTGGCAGTCCGCGAGACCGGGGCA 131054 Query 1628400 CTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAGGTC 1628459 || ||||| | ||| |||||| ||| | | || | | ||| |||||||| Sbjct 131055 CTGATCGGGACACATGAGGGACCAGGTCCCATCCTCCTCCACCCTCTCCATGAAGAGGTC 131114 Query 1628460 ACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTT 1628519 |||| ||| | || ||||| || |||||||| ||||||||| ||||||||||| Sbjct 131115 GGGAATCCATAGTCCATAGAAGAGATCCCGCGCCCGCGCCTCCTCCTTTCCGTGGTTCTT 131174 Query 1628520 TTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGC 1628579 ||||| ||| || | ||||| ||||||||||||||||||||| ||||||||| Sbjct 131175 CCGCAGGTCCAGCACTTCAAAGATGTCCGCGTGCCACGGCTCCAGGTAGATGGCAAAGGC 131234 Query 1628580 GCCCTTG-CGCTTGCCGCCGCC 1628600 |||| | | |||||| || || Sbjct 131235 -CCCTGGCCTCTTGCCTCCCCC 131255 >seq6 Length=1241202 Score = 170 bits (188), Expect = 2e-36 Identities = 321/474 (68%), Gaps = 21/474 (4%) Strand=Plus/Minus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || ||||||||||||||| ||||| ||||| || ||||||||||| || |||| |||||| Sbjct 393910 GCCCTGGTCGACGTAGCGGGCCGTATCGTTGAAAACGCGGAGCATAGGTACGATGCCGTT 393851 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAA 1630181 ||| |||||| | || | ||||| | | || || | ||||| || | Sbjct 393850 GGAGGTGCCGTTCGATCCACGAATGTAGGAGTCTCGCGCCCGAATGTTGTGGATGGATAC 393791 Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 ||| || || || || | ||||| ||| ||||| || ||||| |||||||||||||| Sbjct 393790 GCCAATCCCACCCGCAAATTTGGAAATGGCAGCGCATTGCTTGAGGGTGTCGTAGATGCC 393731 Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGT 1630301 ||||| ||||| |||||||| || ||| ||||| || ||| ||| || ||| || Sbjct 393730 GTCGATGGAGTCCTCCTTCATGGTCAGGAGGAAGCAGGAGGAGAGTTGGGGCCGCGGTGT 393671 Query 1630302 GCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTA 1630361 |||||| ||||| || || ||||| || ||||| | | |||||||| | ||| Sbjct 393670 GCCGGCATTGAAAAGTGTAGGCGTAGCATGCGTGAAAAGTTTGAGCGACATGAGATTGTA 393611 Query 1630362 GGTGGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGG---CCGAT 1630418 ||| | ||||||| |||| | || | | | |||| || || Sbjct 393610 GGT------------CTCCAGCGCCGCGTCAATGT------TCTCTTTGTGGATACCAAT 393569 Query 1630419 GGCGACGCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAG 1630478 || || ||||||| ||||| |||||| ||||| | || || ||| || ||| || Sbjct 393568 TGCCACACGCATGATCATGTGCTGGGGGCGCTCCATAACTACCCCGTTCATCTTAAGAAG 393509 Query 1630479 GTAGGACCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTC 1630532 ||| ||| || || | | |||||||||| | | |||| || ||||| Sbjct 393508 GTACGACTTTTCCAGCGTTTTAAAGCCAAAGTAGTCATAATCAAAGTCCCGGTC 393455 Score = 150 bits (166), Expect = 2e-30 Identities = 314/474 (66%), Gaps = 2/474 (0%) Strand=Plus/Minus Query 1628128 AGGTTGCAAGTCGCCACTTCCGTGGGCGACGAAAACTGGACGATCTCGGTGCACAGGTTG 1628187 |||||||| ||| || || |||||||| ||| || |||||| |||||||| ||| Sbjct 394380 AGGTTGCAGACCGCGACCTCATCGGGCGACGTGTACTCGATGATCTCCGTGCACAGATTG 394321 Query 1628188 GCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTCAGGTTGACGGCGTCCTTGTGG 1628247 | || | | || |||| |||||||||||| | |||||||| |||||||||| Sbjct 394320 GATGATTTGATGGTGCCCAAGTTCTGCTGGTTTGATTTCAGGTTGCAGGCGTCCTTGAAC 394261 Query 1628248 AGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACGATGGCCGACCAGATCTGGCGC 1628307 |||||||| |||| ||| ||||| | ||| | | | || || |||||| ||| | Sbjct 394260 AGCATGTAAGGCGTGCCTGTCTCCACCTGGGAGTCCAGAATCGCGAACCAGAGCTGCTGG 394201 Query 1628308 GCGGGCACGACAGTCCGCGCGCGGCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAAG 1628367 || | || | || || || | ||| Sbjct 394200 GCCTTAATAACCTTGCGTGCTTTCCCACTCTTCTCGTAGCTGGCGTAGAGCTGGTTAAAC 394141 Query 1628368 GCCGCGCCGTAGCAC-TCGTGCAGGCCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTC 1628426 || ||||| | ||| || |||||| || |||| || ||||| || |||||||| Sbjct 394140 TCCTCGCCGCA-CACGTCCGCCAGGCCCGGGCACTCGTTGGGGCAAAAAAGGGACCAGTC 394082 Query 1628427 GCCACCGGTCACCGCGCGGCGCATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTC 1628486 || || || || |||| ||||| || ||||| |||||| || ||||| || || || Sbjct 394081 CCCGTCGCTCTCCACGCGCCGCATGAACAGGTCGGGCGTCCAGAGGGCGTAGAACAGATC 394022 Query 1628487 GCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTC 1628546 || || || | | ||| |||||||||||||| ||||| || | || | ||||| Sbjct 394021 ACGTGCACGCTCCAACTCGTTGCCGTGGTTCTTACGCAGGTCCAGGAATTCAAAGATGTC 393962 Query 1628547 GGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 || ||||| ||||| |||||| ||| |||| |||||||||||||| ||||| Sbjct 393961 TGCATGCCAGGGCTCTAGGTAGATGGCGAAGGAACCCTTGCGCTTGCCTCCGCC 393908 >seq16 Length=710462 Score = 113 bits (124), Expect = 6e-19 Identities = 131/173 (76%), Gaps = 8/173 (5%) Strand=Plus/Minus Query 507638 AACCGGCAGCCGTCGCTGCACATGGGCTCCATGCTCATG---CACAAGGTGGTGCCCATG 507694 ||||| ||||| || ||||||| | |||||| |||| ||| ||| | |||| Sbjct 192467 AACCGACAGCCCTCCCTGCACAAGCTCTCCAT---CATGGCCCACCGGGTCAAGGTCATG 192411 Query 507695 CCCGGGCGCACCATGCGATTCAACCTGGCCGTCA-CGGGCACCTACAACGCCGACTTTGA 507753 ||| |||| ||| | || |||||| | ||| || || |||||||||||||||| || Sbjct 192410 CCCTGGCGGACCTTCCGCTTCAACGAGTGCGTGTGCGCGC-CCTACAACGCCGACTTCGA 192352 Query 507754 CGGCGACGAGATGAACCTGCACGTGCCCCAGTCCGAGACGGCGCGCGCCGAGG 507806 |||||||||||||||| ||||| |||||||| | ||| |||||| || |||| Sbjct 192351 CGGCGACGAGATGAACATGCACCTGCCCCAGACGGAGGAGGCGCGGGCGGAGG 192299 >seq26 Length=478243 Score = 109 bits (120), Expect = 7e-18 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| ||||||| || || |||||||||||||| | | || Sbjct 350496 GCTTGGCCAGCTCACCGGGCAGCGTCAGGCGGACAGCCGTCTGGATCTCGCGGGAGGAGA 350555 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 ||| |||| | | | ||||| ||| ||||| ||| ||| |||||||| | Sbjct 350556 GGGTGGACTTCTTGGTGTAACGAGCCAGCTTGCCAGCCTCCGTGGCGAGGCGGTCGAAAA 350615 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACAT-CGACTTGTTGGAGATGCCCACGTCGGGG 1254521 |||| || || ||||||| || || | | || |||||||| || |||||| Sbjct 350616 TGTCACCGATGAAGGAGTTCAGGATGGAAACACCACGC-TTGGAGATACCAGTGTCGGGA 350674 Query 1254522 TGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||||||||||||||||||||||||||| Sbjct 350675 TGCACCTGCTTGAGCACCTTGTAGATG 350701 >seq4 Length=1364975 Score = 104 bits (114), Expect = 3e-16 Identities = 166/236 (70%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 869222 GGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATG 869281 ||||| ||||| |||||||| | ||| || || | |||||| ||| |||||||||||| Sbjct 237844 GGCATCAGGCCCCGCTTCTTCAACCAGAAAATCGAGCAGAAGGAGCCGGAGAAAAAGATG 237785 Query 869282 CCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTG 869341 ||||| ||||| |||||| |||| | ||||||||||| | || | | | | || | Sbjct 237784 CCCTCCACGGCTGCAAAGGCGATCAAGCGCTCGGCAAA--AGACGCGTACTTGC-GGTCG 237728 Query 869342 ATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGA 869401 |||| | |||||| ||||| | || | || || || || |||||| Sbjct 237727 CACCACCGGAGCGCCCAACGCGCCTTGCGTCGGACACAAGGGACGGTCTCAATGGCGTTT 237668 Query 869402 AAGAGGTGGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATA 869457 ||||| | || || |||| |||| ||||| || ||||| || ||||| ||||| Sbjct 237667 AAGAGCTTGTGTTTCTCGGATGGGTTCTTGATGTAAGTGTCAATAAGGAGGGAATA 237612 Score = 100 bits (110), Expect = 3e-15 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 869713 GGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAAAAGCCAGGACGTGCTTGAT 869772 ||||| |||||| ||| |||||||| ||||||||| || || |||||||| || Sbjct 237360 GGCCAAATTCTCGTTCACAATGCCGTCCGAGGCGGCGAAGAAGGCGAGGACGTGTGAGAC 237301 Query 869773 AAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACGGTGTCGGCGCTGAGGTCCAC 869832 |||||| || |||| ||| | | | |||||| ||||| | |||||| | Sbjct 237300 AAAGTGACGTTCGTTGTCCGTTAACTTTTCCCAGTCCGTCTTGTCGTGGGCGAGGTCGAG 237241 Query 869833 CTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCA 869880 ||| ||||| ||||||| ||||||||||| | ||||||||| ||||| Sbjct 237240 CTCTTCGGCCGTCCAGAAGGAGGCCTCGGCTTGTTTGTACATATCCCA 237193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107083067756828