Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq4 136 4e-27 seq3 111 1e-19 seq9 87.8 2e-12 seq6 84.2 2e-11 >seq4 Length=1364975 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| |||||| |||| ||||| || || || || || |||||||| || || ||| Sbjct 829422 GATGCAAATCTTTGTTAAGACGCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCCAG 829363 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || || ||||| || ||||| || || || || || ||||| Sbjct 829362 TGACACGATCGAGAATGTGAAGCAGAAGATTCAGGACAAGGAGGGTATCCCCCCTGATCA 829303 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || | || ||||| ||||| ||||||||||| | | | |||| || || || Sbjct 829302 GCAGCGCCTCATTTTTGCGGGGAAGCAGCTGGAGGACGGGCGCACGTTGTCTGACTACAA 829243 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||| || || || || ||||| ||||| |||||||||| || || Sbjct 829242 CATTCAGAAAGAGTCTACCCTACATTTGGTCCTGCGATTGCGTGGCGG 829195 >seq3 Length=1384164 Score = 111 bits (122), Expect = 1e-19 Identities = 168/236 (71%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | || || || || || || || || || | || || || || Sbjct 138009 ACCATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACATTGGATGTCGAGCCC 138068 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||| || | |||| || || |||||||| |||||||| || || || || |||||| Sbjct 138069 AGCGATACCATCGAAAATGTGAAGCAAAAGATTCAAGACAAGGAGGGCATTCCCCCCGAT 138128 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA---TGTCAGAT 24877 || || || | || || || || || |||||||| || || || || |||| || Sbjct 138129 CAGCAGCGCCTAATTTTCGCAGGAAAGCAGCTGGAAGA--CG-GACGCACGCTGTCTGAC 138185 Query 24878 TATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGG 24933 || |||||||| || || || || | |||||||| ||||| ||||| || || || Sbjct 138186 TACAACATTCAGAAAGAGTCAACCTTGCACTTGGTCTTGCGCTTGCGTGGTGGGGG 138241 >seq9 Length=1164708 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || |||| || || || || || || ||||| | || || || ||| | Sbjct 608175 ATGCAAATTTTCGTTAAGACCCTGACGGGCAAGACCATTACTTTGGACGTGGAGCCCAGC 608116 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||||| ||||| || || || || || ||||| Sbjct 608115 GACACCATTGAGAATGTGAAGCAAAAGATCCAGGACAAGGAGGGGATCCCCCCTGATCAG 608056 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 || || | || |||||||| || ||||| |||||| Sbjct 608055 CAGCGCCTCATTTTTGCCGGCAAGCAGCTCGAGGAT 608020 >seq6 Length=1241202 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 138514 AATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCG 138573 ||||| || ||||| || ||||| ||| ||||| ||||||||||||| || ||| Sbjct 394965 AATTCGCCCGCCAACACGCGACGGGAGTACATGTTCGATGTGAAAGGCTCAACAGACTCG 394906 Query 138574 TTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTC 138633 ||||| ||||| ||||| || || | ||||| |||||| || | ||| || || || Sbjct 394905 TTGTTGCCCAGGATCTGCGCAGTAGATGCGGTAGGCATGGGTGCGAGCAATAGTGAGTTG 394846 Query 138634 CGTAAACCGTG 138644 || | |||||| Sbjct 394845 CGGACACCGTG 394835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449893753375520