Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq29 185 1e-40 seq26 161 2e-33 seq6 159 5e-33 seq4 131 3e-24 seq16 111 2e-18 seq2 93.3 7e-13 seq11 89.7 8e-12 >seq29 Length=316797 Score = 185 bits (204), Expect = 1e-40 Identities = 304/439 (69%), Gaps = 4/439 (1%) Strand=Plus/Plus Query 2071576 TGGACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGCTG 2071635 ||||||| |||||||||||| || | ||| | ||||||||| |||||| |||||||| Sbjct 130819 TGGACGATCTCGGTGCACAGATTCGAGGACTTGATGGTGCCCAAGTTCTGTTGGTTGCTC 130878 Query 2071636 GTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTG 2071695 |||||||| |||||||||| |||||||||||||| |||||||| ||||||| Sbjct 130879 TTCAGGTTGCAAGCGTCCTTGTACAGCATGTAGGGCGTGCCCGTCTCAATCTGCGAGTCC 130938 Query 2071696 ACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCGCGGCCCTNNNNNNNN 2071755 | |||||| |||| | | | || |||| | || | | ||||||| Sbjct 130939 AAGATGGCAAACCACAAGTCCTGAGCACGCACTGTCTTCTTGACTCGGCCCTCTCGTTCG 130998 Query 2071756 NNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCTCG 2071815 | ||| | ||||| ||||||||| || || ||||| || | Sbjct 130999 TATTTTAAATATAGGTCCCGGAAGGCCTGGCCGTGGCAGTCCGCGAGACCGGG-GCACTG 131057 Query 2071816 GACGGG-CAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTCGCA 2071874 |||| || | ||| |||||| || | | |||| | ||| || |||||| Sbjct 131058 ATCGGGACACATGAGGGACCAGGTCCCATCCTCCTCCACCCTCTCCATGAAGAGGTCGGG 131117 Query 2071875 CGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTT 2071934 |||| || || || |||||||| |||||||| ||||||||| ||||||||||| Sbjct 131118 AATCCATAGTCCATAGAAGAGATCCCGCGCCCGCGCCTCCTCCTTTCCGTGGTTCTTCCG 131177 Query 2071935 CAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCC 2071994 |||||| ||| || | || ||| ||||||||||||||||||||| ||||||||| || Sbjct 131178 CAGGTCCAGCACTTCAAAGATGTCCGCGTGCCACGGCTCCAGGTAGATGGCAAAGGC-CC 131236 Query 2071995 CTTG-CGCTTGCCGCCGCC 2072012 || | | |||||| || || Sbjct 131237 CTGGCCTCTTGCCTCCCCC 131255 Score = 152 bits (168), Expect = 8e-31 Identities = 191/260 (73%), Gaps = 4/260 (2%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 |||||| || |||||||||||| ||| ||||| | |||||||||||| || |||||| Sbjct 131256 CTGGTCCACGTAGCGCGCCGTGACGTCGAAGACCCTGAGCATGGGCACCAGACCGTTG-- 131313 Query 2073600 CTCG--CCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAG 2073657 |||| || || |||||| | ||||||||| ||||| | ||||| | | | | Sbjct 131314 CTCGTCCCCTTCGTGCCCTTAATGTAGGCGCCGTGCGCGCGGATGTTGTGGACCGAGAGG 131373 Query 2073658 CCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCC 2073717 ||||| || || ||||||||| || | ||||||| |||||||| |||||||| || Sbjct 131374 CCGATTCCCCCCGCCGCCTTGCTTATCACGGCGCACTGCTTCAGCGTGTCGTAGATACCA 131433 Query 2073718 TCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTG 2073777 |||||||||| || | |||| ||| || |||||||| || | |||||| |||| Sbjct 131434 ACGATCGAGTCCGCTTGCATGGCCAGGAGGAAGCACGAGGACATCTGCGGGAAACGCGTG 131493 Query 2073778 CCGGCATTGAAGAGCGTGGG 2073797 || || | ||| || || || Sbjct 131494 CCCGCGTGGAAAAGAGTAGG 131513 Score = 96.9 bits (106), Expect = 5e-14 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 1761309 GTTCTACCTCTACACGCGCAGGGGTCCCTCGTCCGAGTCGCTCCACCTCGGCCACATGAT 1761368 ||| ||||| |||||| | | || || || |||||| || |||||||| ||| | || Sbjct 204617 GTTTTACCTGTACACGGGGCGCGGCCCTTCCTCCGAGAGCCTGCACCTCGGGCACCTCAT 204676 Query 1761369 TCCGTTTCTCTTTTGCCGCTACCTCCAGGAGGCCTTTGGCGTGCCTTTGGTCGTACAGAT 1761428 || || | ||| |||||||||||||||||| || | ||| ||||| ||| | ||| | Sbjct 204677 CCCCTTCCACTTCACCCGCTACCTCCAGGAGGCTTTCGACGTCCCTTTAGTCATTCAGTT 204736 Query 1761429 GGCCGACGACGCCAAGTTTCTGTACAAG 1761456 | | || |||| ||||||| || |||| Sbjct 204737 GACAGATGACGAGAAGTTTCAGTTCAAG 204764 >seq26 Length=478243 Score = 161 bits (178), Expect = 2e-33 Identities = 183/244 (75%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 350457 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCACCGGGCA 350516 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTG- 1485588 ||||||| || || |||||||||||||||| | || | || ||| || ||| Sbjct 350517 GCGTCAGGCGGACAGCCGTCTGGATCTCGCGGGAGGAGA---GGGTGGACTTCTTGGTGT 350573 Query 1485589 --CGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGT 1485646 || ||||| ||| ||||| ||| ||| |||||||| ||||| || || |||| Sbjct 350574 AACGAGCCAGCTTGCCAGCCTCCGTGGCGAGGCGGTCGAAAATGTCACCGATGAAGGAGT 350633 Query 1485647 TCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCT 1485706 ||| ||| || | |||||||| || |||||| ||||||||||||||||||| Sbjct 350634 TCAGGATGGAAACACCACGCTTGGAGATACCAGTGTCGGGATGCACCTGCTTGAGCACCT 350693 Query 1485707 TGTA 1485710 |||| Sbjct 350694 TGTA 350697 >seq6 Length=1241202 Score = 159 bits (176), Expect = 5e-33 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 2071800 CAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCG 2071859 |||||| || |||| |||||||| || |||||||| ||| | || ||||||| || Sbjct 394120 CAGGCCCGGGCACTCGTTGGGGCAAAAAAGGGACCAGTCCCCGTCGCTCTCCACGCGCCG 394061 Query 2071860 CATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTT 2071919 ||| ||||||||| |||||| ||| |||| || ||||| || || || | | ||| || Sbjct 394060 CATGAACAGGTCGGGCGTCCAGAGGGCGTAGAACAGATCACGTGCACGCTCCAACTCGTT 394001 Query 2071920 GCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTA 2071979 |||||||||||| |||||| || | || | || ||| || ||||| ||||| ||||| Sbjct 394000 GCCGTGGTTCTTACGCAGGTCCAGGAATTCAAAGATGTCTGCATGCCAGGGCTCTAGGTA 393941 Query 2071980 GCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 | ||| |||| |||||||||||||| ||||| Sbjct 393940 GATGGCGAAGGAACCCTTGCGCTTGCCTCCGCC 393908 Score = 140 bits (154), Expect = 5e-27 Identities = 191/267 (72%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || ||||||||| ||||| ||||| ||||| || ||||||||||| || || | |||||| Sbjct 393910 GCCCTGGTCGACGTAGCGGGCCGTATCGTTGAAAACGCGGAGCATAGGTACGATGCCGTT 393851 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAA 2073656 ||| |||||| | || | ||||| | | || || | ||||| || | Sbjct 393850 GGAGGTGCCGTTCGATCCACGAATGTAGGAGTCTCGCGCCCGAATGTTGTGGATGGATAC 393791 Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716 ||| || || || || ||||| ||| ||||| | || || || ||||||||||| Sbjct 393790 GCCAATCCCACCCGCAAATTTGGAAATGGCAGCGCATTGCTTGAGGGTGTCGTAGATGCC 393731 Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGT 2073776 ||||| ||||| |||||||| || || ||||| || ||| ||| || |||| || Sbjct 393730 GTCGATGGAGTCCTCCTTCATGGTCAGGAGGAAGCAGGAGGAGAGTTGGGGCCGCGGTGT 393671 Query 2073777 GCCGGCATTGAAGAGCGTGGGCGTCGC 2073803 |||||||||||| || || ||||| || Sbjct 393670 GCCGGCATTGAAAAGTGTAGGCGTAGC 393644 Score = 95.1 bits (104), Expect = 2e-13 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 2070133 AACGCGTCGGCCAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCAGGTTCGAGTGC 2070192 || ||||| |||| ||||||||||||| || || || ||||| |||| ||||||| || Sbjct 394599 AAGGCGTCCGCCAAACCCTGCACGCCGATCCCGATGGGGCGGTGTCGCATGTTCGAGCGC 394540 Query 2070193 CGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGATCACGCGGTTGAGGTT 2070242 | ||| || || ||||||| ||||||||| || |||||||| ||||| Sbjct 394539 CTGGCTTCCTCGACAGGGTAGTAGTTGATGTCTATGACGCGGTTCAGGTT 394490 Score = 91.5 bits (100), Expect = 2e-12 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 2071564 GGCGACGAAAACTGGACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTC 2071623 ||||||| ||| || || ||| |||||||| |||| || | ||||||||| |||| Sbjct 394356 GGCGACGTGTACTCGATGATCTCCGTGCACAGATTGGATGATTTGATGGTGCCCAAGTTC 394297 Query 2071624 TGCTGGTTGCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCG 2071683 |||||||| |||||||| |||||||||| ||||||||| |||| || ||||| Sbjct 394296 TGCTGGTTTGATTTCAGGTTGCAGGCGTCCTTGAACAGCATGTAAGGCGTGCCTGTCTCC 394237 Query 2071684 ATCTG 2071688 | ||| Sbjct 394236 ACCTG 394232 >seq4 Length=1364975 Score = 131 bits (144), Expect = 3e-24 Identities = 134/175 (77%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 796185 GGCCAGGTTCTCAGCCACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGAT 796244 ||||| ||||| ||| |||||||| ||||||||| |||||||||||||| || Sbjct 237360 GGCCAAATTCTCGTTCACAATGCCGTCCGAGGCGGCGAAGAAGGCGAGGACGTGTGAGAC 237301 Query 796245 AAAGTGACGCTCGTCGTCGCTGAGCGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGAC 796304 ||||||||| |||| ||| | | | |||||| | ||||| | ||||||||| Sbjct 237300 AAAGTGACGTTCGTTGTCCGTTAACTTTTCCCAGTCCGTCTTGTCGTGGGCGAGGTCGAG 237241 Query 796305 CTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGT 796359 ||| ||||| ||||| |||||||||||||| | ||||||||| ||||| ||| || Sbjct 237240 CTCTTCGGCCGTCCAGAAGGAGGCCTCGGCTTGTTTGTACATATCCCAGATCTGT 237186 Score = 131 bits (144), Expect = 3e-24 Identities = 201/286 (70%), Gaps = 7/286 (2%) Strand=Plus/Minus Query 794383 GGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATG 794442 ||||| ||||| |||||||| | ||| || || | ||||| ||| |||||||||||| Sbjct 237844 GGCATCAGGCCCCGCTTCTTCAACCAGAAAATCGAGCAGAAGGAGCCGGAGAAAAAGATG 237785 Query 794443 CCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTT--TGT 794500 ||||| ||||| |||||| ||| | ||||||||||||| | || ||| || Sbjct 237784 CCCTCCACGGCTGCAAAGGCGATCAAGCGCTCGGCAAAAG-----ACGCGTACTTGCGGT 237730 Query 794501 TGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGC 794560 | |||| | |||||| ||||| | || | || || || || |||||| Sbjct 237729 CGCACCACCGGAGCGCCCAACGCGCCTTGCGTCGGACACAAGGGACGGTCTCAATGGCGT 237670 Query 794561 GAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGG 794620 ||||| | || |||||| |||| ||||| ||| ||||| || ||||| || || Sbjct 237669 TTAAGAGCTTGTGTTTCTCGGATGGGTTCTTGATGTAAGTGTCAATAAGGAGGGAATACA 237610 Query 794621 TCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 ||| ||| || |||||||||||||| ||||| || || ||||| Sbjct 237609 CCTCACTGTGAATATTTTCGATGGCGATTTGGAAACCGTAGAAGCA 237564 >seq16 Length=710462 Score = 111 bits (122), Expect = 2e-18 Identities = 144/194 (74%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 429567 AACCGGCAGCCGTCGCTCCACATGGGGTCGATGCTCAACCACAAGGTGGTGCCCATGCCC 429626 ||||| ||||| || || |||| | || || | |||| ||| | ||||||| Sbjct 192467 AACCGACAGCCCTCCCTGCACAAGCTCTCCATCATGGCCCACCGGGTCAAGGTCATGCCC 192408 Query 429627 GGTCGCACCTTCCGGCTCAACCTGGCCGTGA-CGGGCACCTACAACGCCGACTTTGACGG 429685 | || |||||||| ||||| | |||| || || |||||||||||||||| ||||| Sbjct 192407 TGGCGGACCTTCCGCTTCAACGAGTGCGTGTGCGCGC-CCTACAACGCCGACTTCGACGG 192349 Query 429686 CGACGAGATGAACCTGCACGTGCCCCAGTCGGAGATGGCACGCGCCGAAGTCGCCCACAC 429745 ||||||||||||| ||||| |||||||| ||||| ||| || | || || || |||| | Sbjct 192348 CGACGAGATGAACATGCACCTGCCCCAGACGGAGGAGGCGCG-GGCGGAGGCGGCCACCC 192290 Query 429746 -CATGGGCGTGGCC 429758 ||||||||| || Sbjct 192289 TGATGGGCGTGACC 192276 >seq2 Length=1443245 Score = 93.3 bits (102), Expect = 7e-13 Identities = 186/273 (68%), Gaps = 12/273 (4%) Strand=Plus/Plus Query 429519 GGGTGGACCGTCGAGCGCCACCTGCGCACCGGCGACCCCGTGGTCATGAACCGGCAGCCG 429578 || ||||| ||||| || ||| |||| || ||| |||| || | |||||||||||| Sbjct 1182934 GGCTGGACGGTCGAACGGCACATGCGGGACGACGATGTCGTGCTCTTTAACCGGCAGCCG 1182993 Query 429579 TCGCTCCACATGGGGTCGAT----GCTCAACCA--CAAGGTGGTGCCCATGCCCGGTCGC 429632 || | |||| ||| || | ||| | ||||||| || | | |||| | Sbjct 1182994 TCCTTGCACAAAATGTCAATCATGGGTCACCGCGTCAAGGTGCTG-----GACTGGTC-C 1183047 Query 429633 ACCTTCCGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGCGACGAG 429692 |||||||| || || || | ||||| |||||||||| || || ||||| |||||| Sbjct 1183048 ACCTTCCGCCTGAATTTGTCTGTGACCACACCCTACAACGCGGATTTCGACGGGGACGAG 1183107 Query 429693 ATGAACCTGCACGTGCCCCAGTCGGAGATGGCACGCGCCGAAGTCGCCCACACCATGGGC 429752 ||||| ||||| |||||||| || | || || || |||| | || | |||| Sbjct 1183108 ATGAATTTGCACTTGCCCCAGACGTTAAACGCGCGGGCAGAAGCGGAACAAATCATGATG 1183167 Query 429753 GTGGCCCTCAAGGCCGTGTCGCCGCAGGCCAAC 429785 ||| | | ||| ||| || ||||| |||||| Sbjct 1183168 GTGCCTCGCAACATCGTTTCTCCGCAAGCCAAC 1183200 >seq11 Length=1065987 Score = 89.7 bits (98), Expect = 8e-12 Identities = 169/243 (70%), Gaps = 8/243 (3%) Strand=Plus/Plus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 || |||||||| ||||| || || || |||||||||||| | |||||||| || | | Sbjct 548948 TATTTGGTGACAGCCTTCGTTCCTTCAGAGACGGCGTGCTTCGCCAGTTCACCAGGAAGA 549007 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTG--- 1485588 | ||||| || || ||||||||||| ||| | || | | || ||| |||||| Sbjct 549008 GTAAGGCGTACTGCCGTCTGGATCTCCCGG--GAAGAAAG-GGTGGACTTCTTAGTGTAT 549064 Query 1485589 CGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 || || || ||||||||| || | | ||||||| ||||| || || || || Sbjct 549065 CGGGCAAGTTTGCCGGCCTCCGTTGCCAGACGGTCGAAAATGTCTCCGATGAAAGAATTG 549124 Query 1485649 ATGATCGACA-TCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 | ||||| | | | | |||||||| || ||| || || || ||||| | |||||| Sbjct 549125 AGAATCGAAACGCCACGT-TTGGAGATACCAGTGTCAGGATGTACTTGCTTCAACACCTT 549183 Query 1485708 GTA 1485710 ||| Sbjct 549184 GTA 549186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916173639800276