Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_022749.1 Length=39758 Score E Sequences producing significant alignments: (Bits) Value seq502 100 7e-17 >seq502 Length=611 Score = 100 bits (110), Expect = 7e-17 Identities = 162/229 (71%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 8991 CGTCACAAGCTTGCCAGTGACGGTACCCGCTTTGGTC-CCGGTCAGGCGATTGTCACCCC 9049 || ||||||||||| | ||||| ||||| ||| | | |||| |||||||| ||||| || Sbjct 24 CGCCACAAGCTTGCGAACGACGGCACCCGTTTTTGCCGCCGGGCAGGCGATCGTCACGCC 83 Query 9050 GGCGGTGATCAAAGGGGAACTGCTGGCAACCTACCGTCAGCTTGAGCGAGCG-GGGATCG 9108 | ||||| | || | || ||| | || || |||| ||| ||| | ||| | | Sbjct 84 GTCGGTGCTGAAGGCCGAGCTGGTCGCGCTGATGCGCGAGCTCGAG-GAGGGTGGGCTGG 142 Query 9109 TGGAAAACTACGAACTGTTTAAGCAGTACCTGGTTTTGGAGCGTGATGCCAGCGATCCGA 9168 | || ||| ||| | ||| ||| ||||| | | ||||| ||||||| ||| |||| Sbjct 143 TCGAGAACCTCGACCAGTTCAAGGCCGACCTGATCGTCGAGCGCGATGCCACCGACCCGA 202 Query 9169 ACCGCCTGAACACGCTGTTCCCGCCTGACTATGTTAACCAGTTGCGTGT 9217 |||| | ||| |||| ||||||| ||| || |||||| |||| || Sbjct 203 CCCGCGTCAACGCGCTCGTCCCGCCCGACCTGGTGAACCAGCTGCGCGT 251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127102967597760