Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq684 715 0.0 >seq684 Length=114989 Score = 715 bits (792), Expect = 0.0 Identities = 751/982 (76%), Gaps = 8/982 (1%) Strand=Plus/Plus Query 157051 TTCTGCGAGTGGGTAACTTCCACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTGCTT 157110 |||||| ||| | ||| ||| | |||||||| || | |||||||||||||| | Sbjct 68463 TTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTA 68522 Query 157111 ATGATTCCAACATTGCTTGCAGCAACTATCTGCTTCATTGTTGCATTCGTAGCAGCACCT 157170 ||||| || ||||| | |||| || | ||||||||| | || ||| | ||||||||| Sbjct 68523 ATGATCCCTACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCATCGCAGCACCT 68582 Query 157171 CCCGTTGATATCGACGGTATTCGCGAACCAGTTGCTGGTTCTCTCATGTATGGCAACAAC 157230 || || |||||||| ||||| || |||||||| ||||| || || | || || |||||| Sbjct 68583 CCAGTAGATATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATACGGAAACAAC 68642 Query 157231 ATCATCTCTGGTGCAGTTGTTCCTTCTTCAAACGCAATCGGTCTTCACTTCTACCCCATC 157290 || ||| | ||||| ||| |||| ||| ||||| || ||| ||||||||||||| | Sbjct 68643 ATTATCACAGGTGCGGTTATTCCAAGTTCTAACGCTATTGGTATTCACTTCTACCCAGTT 68702 Query 157291 TGGGAAGCAGCATCACTTGATGAGTGGCTTTACAACGGTGGTCCTTTCCAACTGGTAGTC 157350 |||||||| || || | || || |||||||||||||||||||||| |||||| ||||| Sbjct 68703 TGGGAAGCTGCGTCTGTAGACGAATGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTA 68762 Query 157351 TTTCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCGT 157410 || |||||| | | || | | ||| ||||||||||| ||||||||| |||||| Sbjct 68763 TTACACTTCTTATTAGGTGTAGCTTGCTACATGGGACGTGAATGGGAACTTAGCTACCGT 68822 Query 157411 TTAGGTATGCGCCCCTGGATCTGTGTTGCCTACTCGGCACCAGTCGCTGCTGCGAGTGCA 157470 ||||| ||||| || ||||| | || || | ||| || ||||| ||||| || |||||| Sbjct 68823 TTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCA 68882 Query 157471 GTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATC 157530 |||||| | | || || |||| |||||| ||||| |||| ||||||| | |||||| Sbjct 68883 GTATTCTTAATTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATC 68942 Query 157531 TCTGGTACTTTTAACTATATGCTCGTCTTCCAGGCAGAGCACAATATTCTTATGCATCCG 157590 ||||||||||| |||| ||| | || ||||| ||||| ||||| ||||||||||| || Sbjct 68943 TCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACCCA 69002 Query 157591 TTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACGGA 157650 ||||| ||| || |||||||| || || ||||||||||| ||| ||| |||||||| Sbjct 69003 TTCCATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGTGCAATGCACGGT 69062 Query 157651 AGTCTCGTTACTTCCTCGCTT-GTTCGTGAAACAACTGAA-ACAGAGTCACAG--AACTA 157706 ||| || || | || | || | ||||| ||||||| || | || | | ||||| Sbjct 69063 TCTCTTGTAACAT-CTAGTTTAATCCGTGA---AACTGAAGACGGTGTATCTGCTAACTA 69118 Query 157707 TGGTTACAAGTTCGGTCAAGAAGAAGAGACGTACAACATCGTTGCTGCACACGGTTACTT 157766 |||||||| || || ||||||||||| || ||||||||||| ||||||||||||||||| Sbjct 69119 CGGTTACAAATTTGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACTT 69178 Query 157767 CGGTCGCCTGATCTTCCAATACGCTTCATTCAACAACAGCAGAAGTCTTCACTTCTTCCT 157826 || || | |||||||||||||| ||||||||| | | | ||||||||| | Sbjct 69179 TGGACGTTTAATCTTCCAATACGCAAGTTTCAACAACTCACGTGCTTTACACTTCTTCTT 69238 Query 157827 CGCCGCATGGCCTGTTGTCGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATT 157886 || || ||||| ||||| || |||||||| ||||| || || | ||||| |||||||| Sbjct 69239 AGCTGCTTGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGAATTAGCACAATGGCATT 69298 Query 157887 CAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAA 157946 |||| | ||||| |||||||||||||| || | ||||| | || ||||||||| | || Sbjct 69299 CAACTTAAACGGATTCAACTTCAACCAATCAGTTGTTGATAGCCAAGGTCGTGTGATCAA 69358 Query 157947 CACCTGGGCAGATGTCCTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAA 158006 ||| ||||| || | | ||||| |||| | | ||||||||||| ||||| || ||||| Sbjct 69359 CACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAA 69418 Query 158007 CGCACACAACTTCCCACTGGAT 158028 ||| ||||||||||| || ||| Sbjct 69419 CGCGCACAACTTCCCTCTAGAT 69440 Score = 489 bits (542), Expect = 2e-133 Identities = 719/1012 (71%), Gaps = 4/1012 (0%) Strand=Plus/Plus Query 158775 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 158834 |||||| || |||| |||||| | ||||| ||||||||||| ||| |||| ||||| || Sbjct 37906 TTTGACTTAGTCGATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGT 37965 Query 158835 CTTCTTCTTCTACCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACTTTC 158894 ||| | | | || || || | |||||| |||| || ||| | || || || ||||| Sbjct 37966 CTTTTATTATTTCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTT 38025 Query 158895 GCTACGAGCTGGTATACACATGGACTCGCTACTTCCTATCTTGAGGG-TGCAAACTTTCT 158953 | ||| ||||| ||||||||| | ||| |||| || | ||||| ||| ||||| | Sbjct 38026 GTTACATCTTGGTACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGC-AACTTCTT 38084 Query 158954 TACAGCAGCAGTTTCGACTCCAGCTGATGCTATGGGTCATTCTCTTCTGCTTCTCTGGGG 159013 || | ||| || || || || || || |||||||||||| | | | | ||||| Sbjct 38085 AACTGTAGCTGTATCAACACCTGCAAATAGTATGGGTCATTCATTGATCTTATTATGGGG 38144 Query 159014 TCCTGAGGCTCAAGGGGATTTCGTCAGGTGGGTCCAACTTGGGGGACTCTGGAATTTTGT 159073 || ||||| ||||| ||||| | ||| | ||| | || ||| | |||| |||||| Sbjct 38145 ACCAGAGGCACAAGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTTGT 38204 Query 159074 GGCGCTCCACGGTGCCTTTGCCCTAATTGGTTTCATGCTT-CGCCAGTTTGAACTGGCAC 159132 || | || || || |||| ||||||| ||| || || || || |||||| | || | Sbjct 38205 CGCATTACATGGGGCATTTGGATTAATTGGATTC-TGTTTACGACAATTTGAAATTGCTC 38263 Query 159133 GTCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTG 159192 |||| | ||||| ||||| || ||||| ||||| || || || ||||| || || || | Sbjct 38264 GTCTTGTAGGTATTCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATTCG 38323 Query 159193 TCAGCGTCTTCCTTATCTACCCACTTGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTG 159252 | || ||| | ||||| || | || || | |||||||| || ||||| |||| Sbjct 38324 TTTCTGTATTCTTAATCTATCCTTTAGGACAAGCAAGTTGGTTCTTTGCTCCTAGTTTTG 38383 Query 159253 GGGTGGCCGCAATATTCAGGTTCCTACTCTTCCTACAAGGGTTCCACAATTGGACACTAA 159312 | || || || || ||| | |||||| | ||| ||||||| ||||| || |||||||| | Sbjct 38384 GAGTTGCAGCTATTTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGGACACTTA 38443 Query 159313 ACCCCTTCCATATGATGGGAGTTGCTGGTATCCTAGGTGGAGCACTTCTATCTGCTATTC 159372 | || ||||| |||||||| || || || || ||||||| ||||| ||||||| |||| Sbjct 38444 ATCCATTCCACATGATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCTGCAATTC 38503 Query 159373 ATGGGGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAAGG 159432 |||| | || || ||||| ||||||| ||| ||||| || || || || || | Sbjct 38504 ATGGAGCTACTGTAGAAAACACATTATTCGAAGATGGTGATGCTGCGAATACATTCCGTG 38563 Query 159433 CGTTTGATTCAACTCAAGAGGAGGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGT 159492 | || |||| ||| || || |||||||| ||||| || || ||| | ||||||| Sbjct 38564 CTTTCACACCAACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAACAGATTCTGGT 38623 Query 159493 CGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTTATGTTGTTTG 159552 | || || || || |||| ||||||||||| || |||||||||||||| ||||| |||| Sbjct 38624 CTCAAATTTTTGGTGTTGCTTTTTCTAACAAACGTTGGCTTCATTTCTTCATGTTATTTG 38683 Query 159553 TGCCTGTTATGGGTCTATGGACATCCAGTATTGGCATTATTGGTCTTGCTCTCAATCTTC 159612 | || || | ||| |||||||| | |||| || | ||| | || | || | Sbjct 38684 TTCCAGTAACAGGTTTATGGACAAGTTCTTTTGGTATAGTAGGTTTAGCATTAAACTTAA 38743 Query 159613 GTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAAACGT 159672 | || || || || || ||||||| | | ||||| |||||||||||||||||||| | Sbjct 38744 GAGCATATGACTTTGTATCTCAAGAGCTTCGTGCAGCTGAAGATCCAGAATTTGAAACTT 38803 Query 159673 TCTACACCAAGAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATC 159732 |||| || || || || | | || ||||| | | | ||| |||| | || | Sbjct 38804 TCTATACTAAAAATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAGGACC 38863 Query 159733 AACCCCATGAAAACTTCATCTTCCCAGAAGAAGTTCTACCAAGAGGTAACGC 159784 |||| |||||||| || | |||||||| || ||| ||||| | || ||||| Sbjct 38864 AACCACATGAAAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGC 38915 Score = 120 bits (132), Expect = 3e-22 Identities = 175/245 (71%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 158199 TTATCCAGTGTGAAGAGGATCAATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATA 158258 |||| | ||||| || ||| |||||||| |||| || ||||||||| ||| |||| | Sbjct 18861 TTATTGATTGTGATGACGATGAATACATTTTAGATGCTGCAGAAGAAAACGGATTTGA-A 18919 Query 158259 TTAACT-ACTCTTGTCGTGCTGGTGCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGA 158317 || || | |||||| | ||||| |||| || | |||||||| | ||| ||| Sbjct 18920 CTACCTTATTCTTGTAGATCTGGTTCTTGTTCAACTTGTGCAGGACGTGTAGTAGGTGGT 18979 Query 158318 ACTGTTGATCAGAGTGATCAGTCGTTCCTAGACGATGATCAAATCGCAGCAGGATTTGTT 158377 || ||||||| || |||||||| |||| || |||||| | |||| |||||| || Sbjct 18980 ACAATTGATCAATCAGAACAGTCGTTTTTAGAAGACGATCAAGTTGCAGAAGGATTCGTA 19039 Query 158378 CTTACGTGTGTAGCATATCCAACATCTGATTGTGTTGTTGTTACTGATCAAGAGGAGAAC 158437 | || ||||| || ||||| ||||||||||| || | || ||||||| || | Sbjct 19040 TTAACTTGTGTTGCTTATCCCGCATCTGATTGTCAAATTTTAACAAATCAAGAAGATGAG 19099 Query 158438 CTTTA 158442 ||||| Sbjct 19100 CTTTA 19104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545268937910720