Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq684 657 0.0 >seq684 Length=114989 Score = 657 bits (728), Expect = 0.0 Identities = 721/954 (76%), Gaps = 5/954 (1%) Strand=Plus/Plus Query 177585 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACT 177644 ||||| | || ||||||||||||| || | ||||| || || | || |||| || Sbjct 68490 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCTACATTATTAACAGCTACA 68549 Query 177645 ATCTGCTTCATCGTCGCCTTCGTCGCTGCTCCCCCCGTGGACATCGACGGCATCCGTGAA 177704 | |||||||||| |||| ||| |||| || || || || || ||||| || ||||||||| Sbjct 68550 AGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAA 68609 Query 177705 CCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCT 177764 || || ||||| ||||| | || || |||||||| ||| | ||||| ||| | ||| | Sbjct 68610 CCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCGGTTATTCCAAGT 68669 Query 177765 TCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGG 177824 || ||||| |||||| |||||||||| || | |||||||| || || | || || ||| Sbjct 68670 TCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGG 68729 Query 177825 CTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCAT--CTATG 177882 || || ||||||||||||| |||||| ||||| || |||||| | | || | || || Sbjct 68730 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCT-TG 68788 Query 177883 CATATATGGGACGTGAGTGGGAACTTTCATACCGTCTAGGTATGCGCCCCTGGATCTGTG 177942 | || ||||||||||| ||||||||| |||||| |||| ||||| || ||||| | | Sbjct 68789 C-TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCG 68847 Query 177943 TTGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTAGTCTATCCTTTCGGTC 178002 | || | ||| || || || || |||||| ||||| || || | || || |||| | Sbjct 68848 TAGCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCAGTATTCTTAATTTACCCAATCGGAC 68907 Query 178003 AAGGTTCATTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTG 178062 ||||| ||||| |||| ||||||| | ||||||||||||||||| |||| |||| | | Sbjct 68908 AAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCATGTTAG 68967 Query 178063 TATTCCAAGCAGAACACAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCTGGGG 178122 ||||||||||||||||||| || ||||||||||| ||||| ||| ||||||||||| | Sbjct 68968 TATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTG 69027 Query 178123 TATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCTTCGCTCGTCC 178182 | || ||||||||| | ||| ||| ||||| || ||| || || ||| | ||| Sbjct 69028 TGTTTGGTGGATCTTTATTCAGTGCAATGCACGGTTCTCTTGTAACATCTAGTTTAATCC 69087 Query 178183 GTGAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAA 178242 |||| || ||| || || ||||| |||||||| || |||||||||||||||| Sbjct 69088 GTGAAACTGAAGACGGTGTATCTGCTAACTACGGTTACAAATTTGGACAAGAAGAAGAAA 69147 Query 178243 CATATAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCGT 178302 | || |||||||| || || || |||||||| || ||||| ||||||||||| ||| | Sbjct 69148 CTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCAAGTT 69207 Query 178303 TCAACAACTCCCGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGT 178362 |||||||||| ||| | | ||||||||| | || || ||||| || || || ||||||| Sbjct 69208 TCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGGT 69267 Query 178363 TCACCGCACTTGGTGTATCCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGT 178422 | || || ||||| | ||| |||||||| ||| | || ||||||||||||||||| | Sbjct 69268 TAACTGCTCTTGGAATTAGCACAATGGCATTCAACTTAAACGGATTCAACTTCAACCAAT 69327 Query 178423 CCATCCTCGACGGACAAGGACGTGTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCG 178482 | | | || | ||||| ||||| ||||||| ||||| ||| | |||||||||| | Sbjct 69328 CAGTTGTTGATAGCCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCAACCGTGCTG 69387 Query 178483 GTCTCGGCATGGAAGTCATGCACGAAAGAAATAGCACATAACTTCCCGCTTGAT 178536 | | || |||||||| ||||||||| | || || || |||||||| || ||| Sbjct 69388 ATTTAGGTATGGAAGTAATGCACGAACGTAA-CGCGCACAACTTCCCTCTAGAT 69440 Score = 486 bits (538), Expect = 2e-132 Identities = 715/1004 (71%), Gaps = 6/1004 (1%) Strand=Plus/Plus Query 178951 GATGACTGGCTTAATCGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTCTT 179010 ||||||||| | || || ||||| || || ||| | |||||||| || || || | || Sbjct 37918 GATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGTCTTTTATTATTT 37977 Query 179011 CCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTTGG 179070 || || || | |||||| |||| || ||| | || || || |||||||||| |||| Sbjct 37978 CCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTTGTTACATCTTGG 38037 Query 179071 TACACCCATGGTCTTGCTAGTTCCTATCTTGAAGG-TGCTAACTTTCTTACGGCAGCTGT 179129 ||||| ||||| | ||| ||| || | || || ||| ||||| | || | |||||| Sbjct 38038 TACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGC-AACTTCTTAACTGTAGCTGT 38096 Query 179130 CTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 179189 || || ||||| || |||||||||||| | | || | ||||| || ||| | || Sbjct 38097 ATCAACACCTGCAAATAGTATGGGTCATTCATTGATCTTATTATGGGGACCAGAGGCACA 38156 Query 179190 GGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGG 179249 || |||| || ||| ||| | || ||| |||||| ||| || || | || || Sbjct 38157 AGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTTGTCGCATTACATGG 38216 Query 179250 TGCCTTCGCCCTAATTGGATTCATGCTT-CGTCAGTTTGAACTGGCACGTCTCATCGGTA 179308 || || | ||||||||||| || || || || |||||| | || ||||| | |||| Sbjct 38217 GGCATTTGGATTAATTGGATTC-TGTTTACGACAATTTGAAATTGCTCGTCTTGTAGGTA 38275 Query 179309 TCCGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTATTTC 179368 | ||||| || ||||| ||||| ||| | || ||||| || ||||||||| |||||| Sbjct 38276 TTCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATTCGTTTCTGTATTCT 38335 Query 179369 TCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGGCGA 179428 | ||||| || | |||||| | |||||||||||||| || ||||| ||||| || | Sbjct 38336 TAATCTATCCTTTAGGACAAGCAAGTTGGTTCTTTGCTCCTAGTTTTGGAGTTGCAGCTA 38395 Query 179429 TCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTCACA 179488 | || |||||||| | ||||||||||||||||| ||||||||||| || || || |||| Sbjct 38396 TTTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCACA 38455 Query 179489 TGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAACTG 179548 ||||||| || ||||| || | |||||||| || | ||||| |||||||||| |||| Sbjct 38456 TGATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCTGCAATTCATGGAGCTACTG 38515 Query 179549 TAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTTAAAGCGTTCGACTCTA 179608 |||| || ||||| | |||||||| || || || ||||| || ||| | | Sbjct 38516 TAGAAAACACATTATTCGAAGATGGTGATGCTGCGAATACATTCCGTGCTTTCACACCAA 38575 Query 179609 CGCAAGAGGAGGAGACCTATTCTATGGTTACAGCGAACCGTTTTTGGTCGCAGATCTTCG 179668 | ||| || || || ||||| ||||| ||||||||| | || ||||| || || || | Sbjct 38576 CACAATCAGAAGAAACTTATTCAATGGTAACAGCGAACAGATTCTGGTCTCAAATTTTTG 38635 Query 179669 GGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCTTTAAGCTGTTTGTTCCTGTCATGG 179728 | ||| | ||| || || |||||| | || ||||| | | | |||||||| || | | Sbjct 38636 GTGTTGCTTTTTCTAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCAGTAACAG 38695 Query 179729 GTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTAGCTCTTAATCTT-CGTGCTTATGAT 179787 || | ||| |||| |||| || | || |||| |||| ||| | || ||||| Sbjct 38696 GTTTATGGACAAGTTCTTTTGGTATAGTAGGTTTAGC-ATTAAACTTAAGAGCATATGAC 38754 Query 179788 TTTGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTATACAAAG 179847 ||||| ||||||| | | ||||| |||||||| || || || || |||||||| || Sbjct 38755 TTTGTATCTCAAGAGCTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTATACTAAA 38814 Query 179848 AACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCACATGAA 179907 || || | | || ||||| | | | ||| |||| | || |||||||||||| Sbjct 38815 AATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAGGACCAACCACATGAA 38874 Query 179908 AACTTCATCTTCCCAGAAGAAGTCCTACCTAGTGGTAACGCACT 179951 || || | |||||||| || || |||| |||| ||||| || Sbjct 38875 AATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCT 38918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605662021545440