Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq684 156 3e-32 >seq684 Length=114989 Score = 156 bits (172), Expect = 3e-32 Identities = 208/288 (72%), Gaps = 6/288 (2%) Strand=Plus/Minus Query 282194 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 282253 |||||||| ||||| || || | ||| ||||| ||| ||| ||||| || | ||| Sbjct 35608 TCAAAATCATCACCACCTAAGTGGCTATCTCCTGCCGTTGCTAATACTTCAAATACACCA 35549 Query 282254 TCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 282313 || ||| |||| || ||| ||| || |||||||| | ||||||||| | | | Sbjct 35548 TCCCCAACTTCTAAAATAGAAACGTCAAATGTACCACCACCTAAATCAAAAATTA--AAA 35491 Query 282314 TTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCA 282373 || || |||| || ||| || | ||||| |||| ||| || || ||||||||| Sbjct 35490 TTGTTTCATTTGATTT----TTTGTCTAACCCATAAGCAAGAGCTGCGGCTGTTGGTTCA 35435 Query 282374 TTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTT 282433 || ||||| | | || | | || |||||| | ||||| ||||| || ||||||||| Sbjct 35434 TTTATAATACGTAGTACTTCTAATCCTGCAATTTTACCTGCGTCTTTTGTTGCTTGTCTT 35375 Query 282434 TGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACT 282481 || || || |||||||||||||| ||||||||||| || | ||||||| Sbjct 35374 TGAGAGTCATTAAAATATGCAGGGACAGTAATAACAGCTTTTGTTACT 35327 Score = 120 bits (132), Expect = 2e-21 Identities = 216/316 (68%), Gaps = 15/316 (5%) Strand=Plus/Minus Query 85934 TTAGAATATGGTTCATTATCAAATAGTCAAAATCTTCTCCTCCCAAATGTGTATTACCAC 85993 |||||| || |||||||| |||||||||| || || || || || ||| || Sbjct 35634 TTAGAACATACTTCATTATAGCGGAGTCAAAATCATCACCACCTAAGTGGCTATCTCCTG 35575 Query 85994 CTACTGCCAATGTTCTAAATACTCCATTTGAGATATTCATTAACGAAACATCTAATGTCC 86053 | ||| ||| | |||||| |||| | | | | ||||| || ||||| | Sbjct 35574 CCGTTGCTAATACTTCAAATACACCATCCCCAACTTCTAAAATAGAAACGTCAAATGTAC 35515 Query 86054 CAGCTCCTAAGTCATAAACAATTACGTTACCACCAGtttttttATTCCATTTTTCACTTC 86113 || | ||||| ||| ||| ||| | || ||| ||| |||||| | Sbjct 35514 CACCACCTAAATCAAAAA--------TTAAAA----TTGTTTCATTTGATTTTT---TGT 35470 Query 86114 CTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAAC 86173 |||| || || ||||||||||| || ||||||||||| || || || || ||||| | Sbjct 35469 CTAACCCATAAGCAAGAGCTGCGGCTGTTGGTTCATTTATAATACGTAGTACTTCTAATC 35410 Query 86174 CCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTA 86233 | ||||||||| | | || ||||||||||| || | ||||||||||||||| || | Sbjct 35409 CTGCAATTTTACCTGCGTCTTTTGTTGCTTGTCTTTGAGAGTCATTAAAATATGCAGGGA 35350 Query 86234 CAGTAATAACTGCTTT 86249 |||||||||| ||||| Sbjct 35349 CAGTAATAACAGCTTT 35334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740596818490584