Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq3 149 1e-30 >seq3 Length=1384164 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | ||| |||| || ||||||| || || |||||||| || || || ||||| Sbjct 138238 CCACCACGCAAGCGCAAGACCAAGTGCAAGGTTGACTCTTTCTGAATGTTGTAGTCAGAC 138179 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | |||||||| || || ||||| || || ||||| | || ||||| || || Sbjct 138178 AGCGTGCGTCCGTCTTCCAGCTGCTTTCCTGCGAAAATTAGGCGCTGCTGATCGGGGGGA 138119 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| |||||||||||| || |||||||| || ||||| | || || || Sbjct 138118 ATGCCCTCCTTGTCTTGAATCTTTTGCTTCACATTTTCGATGGTATCGCTGGGCTCGACA 138059 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || |||||||| |||| ||||| || || |||||||| Sbjct 138058 TCCAATGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 138012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981818595511876