Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02-
18] 684 sequences; 27,589,342 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq6 297 2e-75
seq29 291 8e-74
seq4 159 3e-34
seq9 152 5e-32
seq3 136 4e-27
>seq6
Length=1241202
Score = 297 bits (328), Expect = 2e-75
Identities = 1189/1853 (64%), Gaps = 73/1853 (4%)
Strand=Plus/Minus
Query 147951 GTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGAC 148010
|| || || ||||||||||| |||||||| ||| | ||| | ||| ||||| ||
Sbjct 395286 GTCCGTAGGTAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGAATAGAAGTGCATGGAG 395227
Query 148011 GACATGAGC-GTGTA--CGTCGGGTGCGGCACAAACAGATTAAACGACTGGCTCTGGTCA 148067
| ||||| ||| | |||||| | | || | | ||| | ||||| |||
Sbjct 395226 G---TGAGCTGTGCAGGCGTCGGATTGGCCAAATGGATATTGAGAGACTGCGACTGACAG 395170
Query 148068 ATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTATCTTCATCTCCCAGGCC 148127
||| | ||||| ||||| |||||| || || | | ||| | |||||||| |
Sbjct 395169 ATGTAGGCGCCGCGGTCGGCGGCCTGGTCGATCACGCACTTCTGCCGGATCTCCCACACT 395110
Query 148128 GTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAGCCGCGG 148187
||||||||||| ||||| | || |||| | | | ||| || ||||| | |
Sbjct 395109 GTCTTGTACAGGTCCTTGAGCTCCCGAGGGATGCTGGCCACATTCTGGACTGAGCCCCTG 395050
Query 148188 TGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGGTCATCG 148247
| | | ||| ||||| || | ||| || | ||| | ||||| ||||| |
Sbjct 395049 TTGCCCATAATTTGATTTCGGACTTCAGAAGTCCACAGGCCTTGGTCGATGAGGTCGCGG 394990
Query 148248 ATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTG 148307
| ||| |||| ||||||||| || ||||| || | |||||| || |||| |||
Sbjct 394989 AGCAGGTACTTGTTCACCACCGTGAATTCGCCCGCCAACACGCGACGGGAGTACATGTTC 394930
Query 148308 CTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGC 148367
|| || || |||| |||||||||||||||| |||||||| || | ||| || |||
Sbjct 394929 GATGTGAAAGGCTCAACAGACTCGTTGTTGCCCAGGATCTGCGCAGTAGATGCGGTAGGC 394870
Query 148368 ATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGC-GCTTCAGAGC 148426
||| || | || || |||||||| | |||| | | | | |||| || | | | |
Sbjct 394869 ATGGGTGCGAGCAATAGTGAGTTGCGGACACCGTGCTCCTGCACTTTGAAGCGTAA-ACC 394811
Query 148427 CGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCG 148486
|||||||||||| | | || || |||||| |||||||||| | || | | |||
Sbjct 394810 GGCCCAGTCCCAGCGAGTTGAGGGGGTCACGCCCCACATGTCGAATTGGAAGACGCCCTT 394751
Query 148487 GCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCT 148546
||| |||| ||| || | | ||| || || | | | ||| | || || |
Sbjct 394750 GCTCATGGGGGAGCCGGCGAAGGTCTCGTAGGGACCCTCCTTCATCGCGATCTC-CATCG 394692
Query 148547 -CGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGC---GCCG 148602
|||||| | ||| ||| |||| || |||||| ||| | | |||| ||| || |||
Sbjct 394691 ACGCCTCTACCGCCCCGAAGTACATGGTCTCGAAAATGTCCTTGTTAAGCTGCTGGGCCT 394632
Query 148603 CCG-ACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACG 148661
||| | | ||| | || | |||| | | || ||||| || | ||||| |||
Sbjct 394631 CCGGAGAC----TCGAATGGGAATCGCATCTTGATGAAGGCGTCCGCCAAACCCTGCACG 394576
Query 148662 CCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCGGATAGTGG 148721
|| | || ||||| |||||| ||||| ||| | | || ||||| || |||| |
Sbjct 394575 CCGATCCCGATGGGGCGGTGTCGCATGTTCGAGCGCCTGGCTTCCTCGACAGGGTAGTAG 394516
Query 148722 TTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAAT 148781
||| ||| |||| || || || || ||||||||| || ||| ||||
Sbjct 394515 TTGATGTCTATGACGCGGTTCAGGTTTCGTGTCACCACCTTCGTGATTTCATACAGCCGC 394456
Query 148782 TCAAAATCGTACTTG----TCATC----TAC--GATGCATC-----GGTTCACGGCGATA 148826
| | ||||| || || || ||| || | || || | | ||| |
Sbjct 394455 TGCAGGTCGTAAGTGGGCGTCTTCCCGCTACCGGAGCCCTCCCCTTGGATGAATGCGGAA 394396
Query 148827 ---------GAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATC 148877
||||| || ||||| || || |||||| || | ||||||| | ||||
Sbjct 394395 AGGTTCACGGAGGCCAGGTTGCAGACCGCGACCTCATCGGGCGACGTGTACTCGATGATC 394336
Query 148878 TCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTG 148937
|| | |||||||||| ||||||| ||||| ||||| || || || ||||
Sbjct 394335 TCCGTGCACAGATTGGATGATTTGATGGTGCCCAAGTTCTGCTGGTTTGATTTCAGGTTG 394276
Query 148938 CACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT---G 148994
|| ||||||||| |||||||||| || ||| || |||||||| | |||| || |
Sbjct 394275 CAGGCGTCCTTGAACAGCATGTAAGGCGTGCCTGTCTCCACCTGGGAGTCCAGAATCGCG 394216
Query 148995 AACC---GATGCAGGTCCTGCGCGCGCACTTGC-TGCTCGTAGCGACCCTCCTGCTCGTA 149050
|||| | ||| || ||| | |||| |||| | | || || || ||||
Sbjct 394215 AACCAGAGCTGCTGGGCCTTAATAACC--TTGCGTGCT--TTCCCACTCTTCT---CGTA 394163
Query 149051 TAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTG 149110
| || ||| | | ||| |||||||| | || | || || ||||||| ||
Sbjct 394162 GCTGGCGTAGAGCTGGTTAAACTCCTCGCCGCACACGTCCGCCAGGCCCGGGCACTCGTT 394103
Query 149111 CGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCAC 149170
||||| | || ||||| | ||||| | ||||||| ||| ||||| ||||||
Sbjct 394102 GGGGCAAAAAAGGGACCAGTCCCCGTCGCTCTCCACGCGCCGCATGAACAGGTCGGGCGT 394043
Query 149171 CCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCT-----TCGGCGCCCATGTTGCGG 149225
|||||| ||||| | || || || |||| || ||| ||| |||
Sbjct 394042 CCAGAGGGCGTAGAACAGATCACG-----TGCACGCTCCAACTCGTTGCCGTGGTTCTTA 393988
Query 149226 CGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCG 149285
||||||| || | || ||||| || ||||| ||||| | ||| | |||| |
Sbjct 393987 CGCAGGTCCAGGAATTCAAAGATGTCTGCATGCCAGGGCTCTAGGTAGATGGCGAAGGAA 393928
Query 149286 CCCTTGCGCTTGCC---GCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACC 149342
|||||||||||||| |||||||||||||| ||| || | | ||| || || || | |
Sbjct 393927 CCCTTGCGCTTGCCTCCGCCCTGGTCGACGTAGCGGGCCGTATCGTTGAAAACGCGGAGC 393868
Query 149343 ATAGGTTCAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGC 149402
|||||| | ||||| ||| |||||||| | | |||| | | ||||| ||
Sbjct 393867 ATAGGTACGATGCCGTTGGAGGTGCCGTTCGATCCACGAATGTAGGAGTCTCGCGCCCGA 393808
Query 149403 ACTTTGTGCACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCG 149462
| ||||| | | ||||| || || || | | || || ||||| ||||| | |
Sbjct 393807 ATGTTGTGGATGGATACGCCAATCCCACCCGCAAATTTGGAAATGGCAGCGCATTGCTTG 393748
Query 149463 AGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCAC 149522
|| || ||||||||| |||||| ||| |||||||||||| || ||||| ||| |
Sbjct 393747 AGGGTGTCGTAGATGCCGTCGATGGAGTCCTCCTTCATGGTCAGGAGGAAGCAGGAGGAG 393688
Query 149523 ATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTC 149582
| ||| || | |||||||| ||| | || || | || || || ||| |||
Sbjct 393687 AGTTGGGGCCGCGGTGTGCCGGCATTGAAAAGTGTAGGCGTAGCATGCGTGAAAAGTTTG 393628
Query 149583 TGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATG 149642
| ||| | | ||| | ||| ||| | ||| |||| || ||||| || ||
Sbjct 393627 AGCGACATGAGATTGTAGGTCTCCAGCGCCGCGTCAATGTTCTCTTTGTGGATACCAATT 393568
Query 149643 GCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACT--TTGTTTCCAATTTTGAGCA 149700
|| || ||||| | ||| ||||| || |||||| ||| ||| || || || |
Sbjct 393567 GCCACACGCATGATCATGTGCTGGGGGCGCTCCATAACTACCCCGTTC--ATCTTAAGAA 393510
Query 149701 AGTAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGG 149753
||| ||||| || || || |||||||||| | || |||||||| |||
Sbjct 393509 GGTACGACTTTTCCAGCGTTTTAAAGCCAAAGTAGTCATAATCAAAGTCCCGG 393457
>seq29
Length=316797
Score = 291 bits (322), Expect = 8e-74
Identities = 621/919 (68%), Gaps = 19/919 (2%)
Strand=Plus/Plus
Query 148827 GAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCAC 148886
|| || || ||||| || ||| ||| |||| | |||| | |||||||||| ||||
Sbjct 130777 GACGCCAGGTTGCAGACCGCCACCTCTTCCGCGCTCGTGTATTGGACGATCTCGGTGCAC 130836
Query 148887 AGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCC 148946
||||| | | ||||| ||||| ||||| ||| |||||||| |||||| ||||||
Sbjct 130837 AGATTCGAGGACTTGATGGTGCCCAAGTTCTGTTGGTTGCTCTTCAGGTTGCAAGCGTCC 130896
Query 148947 TTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATG--AACCGATGCA 149004
|||||||||||||| || ||| || || | ||||| |||| ||| || | | ||
Sbjct 130897 TTGTACAGCATGTAGGGCGTGCCCGTCTCAATCTGCGAGTCCAAGATGGCAAACCA--CA 130954
Query 149005 GGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCC 149064
|||||| || |||||| || || | || ||||| | |||||| ||| ||
Sbjct 130955 AGTCCTGAGCACGCACTGTCTTCTTGACTCGGCCCTCTCGTTCGTATTTTAAATATAGGT 131014
Query 149065 GCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCG 149124
| ||| |||| ||||| ||| || ||||||||||||||| | || |||||||| |
Sbjct 131015 CCCGGAAGGCCTGGCCGTGGCAGTCCGCGAGACCGGGGCACTGATCGGGACACATGAGGG 131074
Query 149125 ACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACA 149184
|||| || ||| | | ||| | || ||| || || ||||| | ||| || | || |
Sbjct 131075 ACCAGGTCCCATCCTCCTCCACCCTCTCCATGAAGAGGTCGGGAATCCATAGTCCATAGA 131134
Query 149185 TGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGA 149244
||| || |||||| || || || ||| ||||||| ||||| |
Sbjct 131135 AGAGATCCCGCGCCCGCGCCTCCTCCTTTCCGTGGTTCTTCCGCAGGTCCAGCACTTCAA 131194
Query 149245 ATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTG-CGCTTG---CCG 149300
| |||||||||||||||||||| | ||| | || | || |||| | | |||| ||
Sbjct 131195 AGATGTCCGCGTGCCACGGCTCCAGGTAGATGGCAAAGGC-CCCTGGCCTCTTGCCTCCC 131253
Query 149301 CCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTG 149360
|||||||| |||| |||| || || || || || | | ||| || | | || ||
Sbjct 131254 CCCTGGTCCACGTAGCGCGCCGTGACGTCGAAGACCCTGAGCATGGGCACCAGACCGTTG 131313
Query 149361 GCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACG 149420
|| || || || ||||| |||| |||| || | ||||| || || |
Sbjct 131314 CTCGTCCCCTTCGTGCCCTTAATGTAGGCGCCGTGCGCGCGGATGTTGTGGACCGAGAGG 131373
Query 149421 CCGAT----GCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGAT 149476
||||| |||||||| | ||| || | ||||| | ||||| ||||||
Sbjct 131374 CCGATTCCCCCCGCCGCCTTGCTT----ATCACGGCGCACTGCTTCAGCGTGTCGTAGAT 131429
Query 149477 GCCCTCGATGCTGTCGCGCTT-CATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAAC 149535
|| |||| ||| ||||| ||||| ||| || ||||||||| |||| ||||| ||||
Sbjct 131430 ACCAACGATCGAGTC-CGCTTGCATGGCCAGGAGGAAGCACGAGGACATCTGCGGGAAAC 131488
Query 149536 GCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCT 149595
||||||| || ||| | || ||| |||||| | || | || | |||||| | ||
Sbjct 131489 GCGTGCCCGCGTGGAAAAGAGTAGGGGAGGCGTGGATGAACCACTTGTTGCTCATGAGCT 131548
Query 149596 CGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCA 149655
|||| | ||| | || | || || || |||||||| || | ||| ||||||| |
Sbjct 131549 CGTAGGTCTCCAAGGCGGCGGGCAGATCCTCTCCATGGATACCAAGGGCAACGCGCAGAA 131608
Query 149656 GCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTA 149715
|||| | |||||| |||||| |||| ||| || || || ||||||||| | ||| |
Sbjct 131609 GCATGTACTGCGGGCGCTCCACCACCTTGCGCCCGATCTTCAGCAAGTAGGCTCGTTCCA 131668
Query 149716 GTGTCTTGTAGCCAAAGTA 149734
|| ||| |||| || ||
Sbjct 131669 TGGTTTTGAAGCCGAAATA 131687
>seq4
Length=1364975
Score = 159 bits (176), Expect = 3e-34
Identities = 159/206 (77%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514
||||||| ||| ||||||||||| || ||||| || || |||| | |||||| |||
Sbjct 829216 AAATGTAGGGTAGACTCTTTCTGAATGTTGTAGTCAGACAACGTGCGCCCGTCCTCCAGC 829275
Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574
||||| ||||| ||||||| |||||||| || || ||||| || |||||||| |||
Sbjct 829276 TGCTTCCCCGCAAAAATGAGGCGCTGCTGATCAGGGGGGATACCCTCCTTGTCCTGAATC 829335
Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634
|| ||||| | | ||| | |||||| ||||||||||||||| |||| ||| |||||
Sbjct 829336 TTCTGCTTCACATTCTCGATCGTGTCACTGGGCTCCACGTCGAGCGTGATGGTCTTGCCC 829395
Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660
||||| || || || || || |||||
Sbjct 829396 GTCAGCGTCTTAACAAAGATTTGCAT 829421
>seq9
Length=1164708
Score = 152 bits (168), Expect = 5e-32
Identities = 129/159 (81%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
||||||||||||||||| || ||||||| |||||||| || || ||||| || ||||||
Sbjct 608021 TCCTCGAGCTGCTTGCCGGCAAAAATGAGGCGCTGCTGATCAGGGGGGATCCCCTCCTTG 608080
Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625
|| |||||||||||| | | ||||| |||||| ||||||||||||| | || | |
Sbjct 608081 TCCTGGATCTTTTGCTTCACATTCTCAATGGTGTCGCTGGGCTCCACGTCCAAAGTAATG 608140
Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATGGCT 133664
|| ||||| ||||| || || |||||||| |||||||||
Sbjct 608141 GTCTTGCCCGTCAGGGTCTTAACGAAAATTTGCATGGCT 608179
>seq3
Length=1384164
Score = 136 bits (150), Expect = 4e-27
Identities = 155/208 (75%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514
|| || | ||| ||||||||||| || ||||| || || |||| ||| || |||
Sbjct 138217 AAGTGCAAGGTTGACTCTTTCTGAATGTTGTAGTCAGACAGCGTGCGTCCGTCTTCCAGC 138158
Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574
||||| || ||| |||| || |||||||| ||||| || ||||| |||||||| |||
Sbjct 138157 TGCTTTCCTGCGAAAATTAGGCGCTGCTGATCGGGGGGAATGCCCTCCTTGTCTTGAATC 138098
Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634
|||||||| | | || | || ||| ||||||| || || | |||| ||| |||||
Sbjct 138097 TTTTGCTTCACATTTTCGATGGTATCGCTGGGCTCGACATCCAATGTGATGGTCTTGCCC 138038
Query 133635 GTCAGAGTTTTTACGAAAATCTGCATGG 133662
||||| || || ||||| ||||||||||
Sbjct 138037 GTCAGGGTCTTGACGAAGATCTGCATGG 138010
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483416666752160
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