Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq6 297 2e-75 seq29 291 8e-74 seq4 159 3e-34 seq9 152 5e-32 seq3 136 4e-27 >seq6 Length=1241202 Score = 297 bits (328), Expect = 2e-75 Identities = 1189/1853 (64%), Gaps = 73/1853 (4%) Strand=Plus/Minus Query 147951 GTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGAC 148010 || || || ||||||||||| |||||||| ||| | ||| | ||| ||||| || Sbjct 395286 GTCCGTAGGTAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGAATAGAAGTGCATGGAG 395227 Query 148011 GACATGAGC-GTGTA--CGTCGGGTGCGGCACAAACAGATTAAACGACTGGCTCTGGTCA 148067 | ||||| ||| | |||||| | | || | | ||| | ||||| ||| Sbjct 395226 G---TGAGCTGTGCAGGCGTCGGATTGGCCAAATGGATATTGAGAGACTGCGACTGACAG 395170 Query 148068 ATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTATCTTCATCTCCCAGGCC 148127 ||| | ||||| ||||| |||||| || || | | ||| | |||||||| | Sbjct 395169 ATGTAGGCGCCGCGGTCGGCGGCCTGGTCGATCACGCACTTCTGCCGGATCTCCCACACT 395110 Query 148128 GTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAGCCGCGG 148187 ||||||||||| ||||| | || |||| | | | ||| || ||||| | | Sbjct 395109 GTCTTGTACAGGTCCTTGAGCTCCCGAGGGATGCTGGCCACATTCTGGACTGAGCCCCTG 395050 Query 148188 TGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGGTCATCG 148247 | | | ||| ||||| || | ||| || | ||| | ||||| ||||| | Sbjct 395049 TTGCCCATAATTTGATTTCGGACTTCAGAAGTCCACAGGCCTTGGTCGATGAGGTCGCGG 394990 Query 148248 ATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTG 148307 | ||| |||| ||||||||| || ||||| || | |||||| || |||| ||| Sbjct 394989 AGCAGGTACTTGTTCACCACCGTGAATTCGCCCGCCAACACGCGACGGGAGTACATGTTC 394930 Query 148308 CTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGC 148367 || || || |||| |||||||||||||||| |||||||| || | ||| || ||| Sbjct 394929 GATGTGAAAGGCTCAACAGACTCGTTGTTGCCCAGGATCTGCGCAGTAGATGCGGTAGGC 394870 Query 148368 ATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGC-GCTTCAGAGC 148426 ||| || | || || |||||||| | |||| | | | | |||| || | | | | Sbjct 394869 ATGGGTGCGAGCAATAGTGAGTTGCGGACACCGTGCTCCTGCACTTTGAAGCGTAA-ACC 394811 Query 148427 CGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCG 148486 |||||||||||| | | || || |||||| |||||||||| | || | | ||| Sbjct 394810 GGCCCAGTCCCAGCGAGTTGAGGGGGTCACGCCCCACATGTCGAATTGGAAGACGCCCTT 394751 Query 148487 GCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCT 148546 ||| |||| ||| || | | ||| || || | | | ||| | || || | Sbjct 394750 GCTCATGGGGGAGCCGGCGAAGGTCTCGTAGGGACCCTCCTTCATCGCGATCTC-CATCG 394692 Query 148547 -CGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGC---GCCG 148602 |||||| | ||| ||| |||| || |||||| ||| | | |||| ||| || ||| Sbjct 394691 ACGCCTCTACCGCCCCGAAGTACATGGTCTCGAAAATGTCCTTGTTAAGCTGCTGGGCCT 394632 Query 148603 CCG-ACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACG 148661 ||| | | ||| | || | |||| | | || ||||| || | ||||| ||| Sbjct 394631 CCGGAGAC----TCGAATGGGAATCGCATCTTGATGAAGGCGTCCGCCAAACCCTGCACG 394576 Query 148662 CCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCGGATAGTGG 148721 || | || ||||| |||||| ||||| ||| | | || ||||| || |||| | Sbjct 394575 CCGATCCCGATGGGGCGGTGTCGCATGTTCGAGCGCCTGGCTTCCTCGACAGGGTAGTAG 394516 Query 148722 TTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAAT 148781 ||| ||| |||| || || || || ||||||||| || ||| |||| Sbjct 394515 TTGATGTCTATGACGCGGTTCAGGTTTCGTGTCACCACCTTCGTGATTTCATACAGCCGC 394456 Query 148782 TCAAAATCGTACTTG----TCATC----TAC--GATGCATC-----GGTTCACGGCGATA 148826 | | ||||| || || || ||| || | || || | | ||| | Sbjct 394455 TGCAGGTCGTAAGTGGGCGTCTTCCCGCTACCGGAGCCCTCCCCTTGGATGAATGCGGAA 394396 Query 148827 ---------GAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATC 148877 ||||| || ||||| || || |||||| || | ||||||| | |||| Sbjct 394395 AGGTTCACGGAGGCCAGGTTGCAGACCGCGACCTCATCGGGCGACGTGTACTCGATGATC 394336 Query 148878 TCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTG 148937 || | |||||||||| ||||||| ||||| ||||| || || || |||| Sbjct 394335 TCCGTGCACAGATTGGATGATTTGATGGTGCCCAAGTTCTGCTGGTTTGATTTCAGGTTG 394276 Query 148938 CACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT---G 148994 || ||||||||| |||||||||| || ||| || |||||||| | |||| || | Sbjct 394275 CAGGCGTCCTTGAACAGCATGTAAGGCGTGCCTGTCTCCACCTGGGAGTCCAGAATCGCG 394216 Query 148995 AACC---GATGCAGGTCCTGCGCGCGCACTTGC-TGCTCGTAGCGACCCTCCTGCTCGTA 149050 |||| | ||| || ||| | |||| |||| | | || || || |||| Sbjct 394215 AACCAGAGCTGCTGGGCCTTAATAACC--TTGCGTGCT--TTCCCACTCTTCT---CGTA 394163 Query 149051 TAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTG 149110 | || ||| | | ||| |||||||| | || | || || ||||||| || Sbjct 394162 GCTGGCGTAGAGCTGGTTAAACTCCTCGCCGCACACGTCCGCCAGGCCCGGGCACTCGTT 394103 Query 149111 CGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCAC 149170 ||||| | || ||||| | ||||| | ||||||| ||| ||||| |||||| Sbjct 394102 GGGGCAAAAAAGGGACCAGTCCCCGTCGCTCTCCACGCGCCGCATGAACAGGTCGGGCGT 394043 Query 149171 CCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCT-----TCGGCGCCCATGTTGCGG 149225 |||||| ||||| | || || || |||| || ||| ||| ||| Sbjct 394042 CCAGAGGGCGTAGAACAGATCACG-----TGCACGCTCCAACTCGTTGCCGTGGTTCTTA 393988 Query 149226 CGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCG 149285 ||||||| || | || ||||| || ||||| ||||| | ||| | |||| | Sbjct 393987 CGCAGGTCCAGGAATTCAAAGATGTCTGCATGCCAGGGCTCTAGGTAGATGGCGAAGGAA 393928 Query 149286 CCCTTGCGCTTGCC---GCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACC 149342 |||||||||||||| |||||||||||||| ||| || | | ||| || || || | | Sbjct 393927 CCCTTGCGCTTGCCTCCGCCCTGGTCGACGTAGCGGGCCGTATCGTTGAAAACGCGGAGC 393868 Query 149343 ATAGGTTCAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGC 149402 |||||| | ||||| ||| |||||||| | | |||| | | ||||| || Sbjct 393867 ATAGGTACGATGCCGTTGGAGGTGCCGTTCGATCCACGAATGTAGGAGTCTCGCGCCCGA 393808 Query 149403 ACTTTGTGCACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCG 149462 | ||||| | | ||||| || || || | | || || ||||| ||||| | | Sbjct 393807 ATGTTGTGGATGGATACGCCAATCCCACCCGCAAATTTGGAAATGGCAGCGCATTGCTTG 393748 Query 149463 AGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCAC 149522 || || ||||||||| |||||| ||| |||||||||||| || ||||| ||| | Sbjct 393747 AGGGTGTCGTAGATGCCGTCGATGGAGTCCTCCTTCATGGTCAGGAGGAAGCAGGAGGAG 393688 Query 149523 ATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTC 149582 | ||| || | |||||||| ||| | || || | || || || ||| ||| Sbjct 393687 AGTTGGGGCCGCGGTGTGCCGGCATTGAAAAGTGTAGGCGTAGCATGCGTGAAAAGTTTG 393628 Query 149583 TGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATG 149642 | ||| | | ||| | ||| ||| | ||| |||| || ||||| || || Sbjct 393627 AGCGACATGAGATTGTAGGTCTCCAGCGCCGCGTCAATGTTCTCTTTGTGGATACCAATT 393568 Query 149643 GCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACT--TTGTTTCCAATTTTGAGCA 149700 || || ||||| | ||| ||||| || |||||| ||| ||| || || || | Sbjct 393567 GCCACACGCATGATCATGTGCTGGGGGCGCTCCATAACTACCCCGTTC--ATCTTAAGAA 393510 Query 149701 AGTAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGG 149753 ||| ||||| || || || |||||||||| | || |||||||| ||| Sbjct 393509 GGTACGACTTTTCCAGCGTTTTAAAGCCAAAGTAGTCATAATCAAAGTCCCGG 393457 >seq29 Length=316797 Score = 291 bits (322), Expect = 8e-74 Identities = 621/919 (68%), Gaps = 19/919 (2%) Strand=Plus/Plus Query 148827 GAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCAC 148886 || || || ||||| || ||| ||| |||| | |||| | |||||||||| |||| Sbjct 130777 GACGCCAGGTTGCAGACCGCCACCTCTTCCGCGCTCGTGTATTGGACGATCTCGGTGCAC 130836 Query 148887 AGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCC 148946 ||||| | | ||||| ||||| ||||| ||| |||||||| |||||| |||||| Sbjct 130837 AGATTCGAGGACTTGATGGTGCCCAAGTTCTGTTGGTTGCTCTTCAGGTTGCAAGCGTCC 130896 Query 148947 TTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATG--AACCGATGCA 149004 |||||||||||||| || ||| || || | ||||| |||| ||| || | | || Sbjct 130897 TTGTACAGCATGTAGGGCGTGCCCGTCTCAATCTGCGAGTCCAAGATGGCAAACCA--CA 130954 Query 149005 GGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCC 149064 |||||| || |||||| || || | || ||||| | |||||| ||| || Sbjct 130955 AGTCCTGAGCACGCACTGTCTTCTTGACTCGGCCCTCTCGTTCGTATTTTAAATATAGGT 131014 Query 149065 GCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCG 149124 | ||| |||| ||||| ||| || ||||||||||||||| | || |||||||| | Sbjct 131015 CCCGGAAGGCCTGGCCGTGGCAGTCCGCGAGACCGGGGCACTGATCGGGACACATGAGGG 131074 Query 149125 ACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACA 149184 |||| || ||| | | ||| | || ||| || || ||||| | ||| || | || | Sbjct 131075 ACCAGGTCCCATCCTCCTCCACCCTCTCCATGAAGAGGTCGGGAATCCATAGTCCATAGA 131134 Query 149185 TGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGA 149244 ||| || |||||| || || || ||| ||||||| ||||| | Sbjct 131135 AGAGATCCCGCGCCCGCGCCTCCTCCTTTCCGTGGTTCTTCCGCAGGTCCAGCACTTCAA 131194 Query 149245 ATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTG-CGCTTG---CCG 149300 | |||||||||||||||||||| | ||| | || | || |||| | | |||| || Sbjct 131195 AGATGTCCGCGTGCCACGGCTCCAGGTAGATGGCAAAGGC-CCCTGGCCTCTTGCCTCCC 131253 Query 149301 CCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTG 149360 |||||||| |||| |||| || || || || || | | ||| || | | || || Sbjct 131254 CCCTGGTCCACGTAGCGCGCCGTGACGTCGAAGACCCTGAGCATGGGCACCAGACCGTTG 131313 Query 149361 GCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACG 149420 || || || || ||||| |||| |||| || | ||||| || || | Sbjct 131314 CTCGTCCCCTTCGTGCCCTTAATGTAGGCGCCGTGCGCGCGGATGTTGTGGACCGAGAGG 131373 Query 149421 CCGAT----GCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGAT 149476 ||||| |||||||| | ||| || | ||||| | ||||| |||||| Sbjct 131374 CCGATTCCCCCCGCCGCCTTGCTT----ATCACGGCGCACTGCTTCAGCGTGTCGTAGAT 131429 Query 149477 GCCCTCGATGCTGTCGCGCTT-CATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAAC 149535 || |||| ||| ||||| ||||| ||| || ||||||||| |||| ||||| |||| Sbjct 131430 ACCAACGATCGAGTC-CGCTTGCATGGCCAGGAGGAAGCACGAGGACATCTGCGGGAAAC 131488 Query 149536 GCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCT 149595 ||||||| || ||| | || ||| |||||| | || | || | |||||| | || Sbjct 131489 GCGTGCCCGCGTGGAAAAGAGTAGGGGAGGCGTGGATGAACCACTTGTTGCTCATGAGCT 131548 Query 149596 CGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCA 149655 |||| | ||| | || | || || || |||||||| || | ||| ||||||| | Sbjct 131549 CGTAGGTCTCCAAGGCGGCGGGCAGATCCTCTCCATGGATACCAAGGGCAACGCGCAGAA 131608 Query 149656 GCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTA 149715 |||| | |||||| |||||| |||| ||| || || || ||||||||| | ||| | Sbjct 131609 GCATGTACTGCGGGCGCTCCACCACCTTGCGCCCGATCTTCAGCAAGTAGGCTCGTTCCA 131668 Query 149716 GTGTCTTGTAGCCAAAGTA 149734 || ||| |||| || || Sbjct 131669 TGGTTTTGAAGCCGAAATA 131687 >seq4 Length=1364975 Score = 159 bits (176), Expect = 3e-34 Identities = 159/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||||| ||| ||||||||||| || ||||| || || |||| | |||||| ||| Sbjct 829216 AAATGTAGGGTAGACTCTTTCTGAATGTTGTAGTCAGACAACGTGCGCCCGTCCTCCAGC 829275 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| ||||| ||||||| |||||||| || || ||||| || |||||||| ||| Sbjct 829276 TGCTTCCCCGCAAAAATGAGGCGCTGCTGATCAGGGGGGATACCCTCCTTGTCCTGAATC 829335 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | | ||| | |||||| ||||||||||||||| |||| ||| ||||| Sbjct 829336 TTCTGCTTCACATTCTCGATCGTGTCACTGGGCTCCACGTCGAGCGTGATGGTCTTGCCC 829395 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || || || || ||||| Sbjct 829396 GTCAGCGTCTTAACAAAGATTTGCAT 829421 >seq9 Length=1164708 Score = 152 bits (168), Expect = 5e-32 Identities = 129/159 (81%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||||||||||||||| || ||||||| |||||||| || || ||||| || |||||| Sbjct 608021 TCCTCGAGCTGCTTGCCGGCAAAAATGAGGCGCTGCTGATCAGGGGGGATCCCCTCCTTG 608080 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||||||||| | | ||||| |||||| ||||||||||||| | || | | Sbjct 608081 TCCTGGATCTTTTGCTTCACATTCTCAATGGTGTCGCTGGGCTCCACGTCCAAAGTAATG 608140 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATGGCT 133664 || ||||| ||||| || || |||||||| ||||||||| Sbjct 608141 GTCTTGCCCGTCAGGGTCTTAACGAAAATTTGCATGGCT 608179 >seq3 Length=1384164 Score = 136 bits (150), Expect = 4e-27 Identities = 155/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||| ||||||||||| || ||||| || || |||| ||| || ||| Sbjct 138217 AAGTGCAAGGTTGACTCTTTCTGAATGTTGTAGTCAGACAGCGTGCGTCCGTCTTCCAGC 138158 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || ||| |||| || |||||||| ||||| || ||||| |||||||| ||| Sbjct 138157 TGCTTTCCTGCGAAAATTAGGCGCTGCTGATCGGGGGGAATGCCCTCCTTGTCTTGAATC 138098 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 |||||||| | | || | || ||| ||||||| || || | |||| ||| ||||| Sbjct 138097 TTTTGCTTCACATTTTCGATGGTATCGCTGGGCTCGACATCCAATGTGATGGTCTTGCCC 138038 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATGG 133662 ||||| || || ||||| |||||||||| Sbjct 138037 GTCAGGGTCTTGACGAAGATCTGCATGG 138010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483416666752160