Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02-
18] 684 sequences; 27,589,342 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq4 129 4e-25
seq3 111 1e-19
>seq4
Length=1364975
Score = 129 bits (142), Expect = 4e-25
Identities = 168/230 (73%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580
|||| || | ||| || | ||||||||||| || |||||| || |||||||| || |
Sbjct 829193 CACCGCCACGCAATCGCAGGACCAAATGTAGGGTAGACTCTTTCTGAATGTTGTAGTCAG 829252
Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640
| | ||||| |||| |||| || || || |||||||| | ||||||||||| | |
Sbjct 829253 ACAACGTGCGCCCGTCCTCCAGCTGCTTCCCCGCAAAAATGAGGCGCTGCTGATCAGGGG 829312
Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699
| | ||| || ||||| ||| ||||| ||| |||| || | ||||| || | |||
Sbjct 829313 GGATACCCTCCTTGTCCTGAATCTTCTGCTTC-ACATTCTCGATCGTGTCACTGGGCTCC 829371
Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
||||| | |||||| || || || || | ||| || |||||||| |||||
Sbjct 829372 ACGTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTAACAAAGATTTGCAT 829421
>seq3
Length=1384164
Score = 111 bits (122), Expect = 1e-19
Identities = 166/233 (71%), Gaps = 2/233 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| | ||| || || ||||| || | || |||||| || |||||||| || ||
Sbjct 138238 CCACCACGCAAGCGCAAGACCAAGTGCAAGGTTGACTCTTTCTGAATGTTGTAGTCAGAC 138179
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| |||||| |||| |||| || ||||| || ||||| | ||||||||||| | ||
Sbjct 138178 AGCGTGCGTCCGTCTTCCAGCTGCTTTCCTGCGAAAATTAGGCGCTGCTGATCGGGGGGA 138119
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| || || ||||| ||| || || |||| ||| || | ||| ||||| | || ||
Sbjct 138118 ATGCCCTCCTTGTCTTGAATCTTTTGCTTCA-CATTTTCGATGGTATCGCTGGGCTCGAC 138060
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTG 33754
|| | ||||| || || || || | || || || ||||||||||| ||||
Sbjct 138059 ATCCAATGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATGGTTG 138007
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328701259841280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |