Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq684 614 2e-171 >seq684 Length=114989 Score = 614 bits (680), Expect = 2e-171 Identities = 684/904 (76%), Gaps = 12/904 (1%) Strand=Plus/Plus Query 19584 CAGCCACCATCTGCTTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCA 19643 |||| || | ||||||||| || || ||||| || || || ||||| || || ||||| | Sbjct 68542 CAGCTACAAGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTA 68601 Query 19644 TCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCG 19703 |||| ||||| || | || ||| | || ||||||||||| || | || || || Sbjct 68602 TCCGTGAACCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCGGTTA 68661 Query 19704 TTCCGAGCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTG 19763 |||| || || || || || | |||||||||||| ||||||||||| || | | Sbjct 68662 TTCCAAGTTCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAG 68721 Query 19764 ATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCA 19823 | |||||||| |||||||| || || | ||||||||| || || |||||| | | || Sbjct 68722 ACGAATGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTG 68781 Query 19824 T--CTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTG 19881 | || |||| |||||||||| || |||||||||||||| || |||| ||| | ||||| Sbjct 68782 TAGCT-TGCT-ACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTG 68839 Query 19882 GATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCGTCTACCC 19941 ||||| || || | ||| ||||| || || || || ||| || || | | ||||| Sbjct 68840 GATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCAGTATTCTTAATTTACCC 68899 Query 19942 GTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTA 20001 | || || ||||||||||| |||| ||||||||| |||||||| ||||| ||||||| Sbjct 68900 AATCGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTCAACTT 68959 Query 20002 CATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGT 20061 |||||| ||||||||||| ||||| |||||||| |||||||| ||||| ||| |||||| Sbjct 68960 CATGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGT 69019 Query 20062 GGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTC 20121 |||||||| || ||||| || |||||||||| ||||||||||| ||||| || | || Sbjct 69020 TGCTGGTGTGTTTGGTGGATCTTTATTCAGTGCAATGCACGGTTCTCTTGTAACAT-CTA 69078 Query 20122 GCTT-GTGCGTGAGACTACTGAACA-GGAAAGTCAG--AACTATGGTTACAAGTTTGGGC 20177 | || | ||||| |||||| | || || | ||||| |||||||| ||||| | Sbjct 69079 GTTTAATCCGTGA---AACTGAAGACGGTGTATCTGCTAACTACGGTTACAAATTTGGAC 69135 Query 20178 AAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCC 20237 |||||||||| || || ||||||||||| || || ||||||||||||||||| ||||||| Sbjct 69136 AAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCC 69195 Query 20238 AATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGG 20297 ||||||| ||||||||| ||| || ||||||||||| | ||||| ||||| || | Sbjct 69196 AATACGCAAGTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTG 69255 Query 20298 TAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCA 20357 |||| || ||||| |||| | || || |||||||| || || | ||||| |||| Sbjct 69256 TAGGTATCTGGTTAACTGCTCTTGGAATTAGCACAATGGCATTCAACTTAAACGGATTCA 69315 Query 20358 ACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTC 20417 |||| ||||| || || | || | | | |||||||| || | ||||||||||||||| Sbjct 69316 ACTTCAACCAATCAGTTGTTGATAGCCAAGGTCGTGTGATCAACACTTGGGCTGACATTA 69375 Query 20418 TCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCAC 20477 |||| |||||| || | || | || || ||||| ||||| || || || |||||||| | Sbjct 69376 TCAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTC 69435 Query 20478 TTGA 20481 | || Sbjct 69436 TAGA 69439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148827591138072