Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq684 601 1e-167 >seq684 Length=114989 Score = 601 bits (666), Expect = 1e-167 Identities = 681/905 (75%), Gaps = 12/905 (1%) Strand=Plus/Plus Query 28712 CAGCCACCATCTGCTTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCA 28771 |||| || | ||||||||| || || ||||| || ||||| ||||| || || ||||| | Sbjct 68542 CAGCTACAAGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTA 68601 Query 28772 TCCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCG 28831 |||| ||||| || |||||| ||| | || ||||||||||| || | || || || Sbjct 68602 TCCGTGAACCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCGGTTA 68661 Query 28832 TACCGAGCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTG 28891 | || || || || || || | |||||||||||| ||||||||||| || | | Sbjct 68662 TTCCAAGTTCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAG 68721 Query 28892 ATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCG 28951 | |||||||| |||||||| || || | ||||||||| || || |||||| | | || | Sbjct 68722 ACGAATGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTG 68781 Query 28952 T--CTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTG 29009 | || ||| ||||||||||| || |||||||||||||| || |||| ||| | || || Sbjct 68782 TAGCT-TGC-TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTG 68839 Query 29010 GATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCC 29069 ||||| || || | ||||||||| || || || ||| ||| || ||| | | ||||| Sbjct 68840 GATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCAGTATTCTTAATTTACCC 68899 Query 29070 ATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTA 29129 | |||| |||||| || || | |||||||| ||||| || || || ||||||| Sbjct 68900 AATCGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTCAACTT 68959 Query 29130 CATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGT 29189 |||| | || |||||||| ||||| |||||||| |||||||| ||||| ||| || || Sbjct 68960 CATGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGT 69019 Query 29190 TGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTC 29249 |||||| ||||| ||||| || |||| ||||||||||||||||| ||||| || | || Sbjct 69020 TGCTGGTGTGTTTGGTGGATCTTTATTCAGTGCAATGCACGGTTCTCTTGTAACAT-CTA 69078 Query 29250 GCTT-GTGCGTGAGACGACTGAAGAC---ATCTCTCAGAACTATGGTTACAAGTTTGGAC 29305 | || | ||||| ||||||||| | ||| ||||| |||||||| ||||||| Sbjct 69079 GTTTAATCCGTGA---AACTGAAGACGGTGTATCTGCTAACTACGGTTACAAATTTGGAC 69135 Query 29306 AAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCC 29365 |||||||||| ||||| ||||||||||| || |||||||||||||||||||| ||||||| Sbjct 69136 AAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCC 69195 Query 29366 AATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGG 29425 |||| || |||||| || ||| || ||||||||||| | ||||| ||||| || | Sbjct 69196 AATACGCAAGTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTG 69255 Query 29426 TAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTA 29485 |||| || ||||| |||| | || || |||||||| || || | ||||| || | Sbjct 69256 TAGGTATCTGGTTAACTGCTCTTGGAATTAGCACAATGGCATTCAACTTAAACGGATTCA 69315 Query 29486 ACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTC 29545 |||| ||||| || || | || | | | |||||||| || || ||||||||||| || Sbjct 69316 ACTTCAACCAATCAGTTGTTGATAGCCAAGGTCGTGTGATCAACACTTGGGCTGACATTA 69375 Query 29546 TCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCAC 29605 |||| || ||| | | || | ||||||||||| || ||||| || || |||||||| | Sbjct 69376 TCAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTC 69435 Query 29606 TTGAT 29610 | ||| Sbjct 69436 TAGAT 69440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146664408708664