Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq684 618 1e-172 >seq684 Length=114989 Score = 618 bits (684), Expect = 1e-172 Identities = 727/977 (74%), Gaps = 6/977 (1%) Strand=Plus/Plus Query 18733 TGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTGATGATTCCG 18792 ||| | || || ||||| |||||| | || ||||| ||||| || | ||||| || Sbjct 68472 TGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCT 68531 Query 18793 TGTCTCCTTGCAGCTACTATTTGTTTCATTATTGCCTTCATTGCTGCACCTCCTGTAGAC 18852 | | ||||||| | || ||||| || || ||||| || |||||||| ||||| Sbjct 68532 ACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGAT 68591 Query 18853 ATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAACATCATATCG 18912 || ||||| ||||| || || || || || ||| | || ||||||||||| || | Sbjct 68592 ATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACA 68651 Query 18913 GGAGCCGTCGTTCCGAGCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCT 18972 || || || |||| || || || || || | |||||||||||| ||||||||||| Sbjct 68652 GGTGCGGTTATTCCAAGTTCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCT 68711 Query 18973 AATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTC 19032 || | || |||||||| |||||||| || || | ||||||||| || || |||||| Sbjct 68712 GCGTCTGTAGACGAATGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTC 68771 Query 19033 CTCATTGGCGT--CTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGGA 19090 | | || || || ||| ||||||||||| || |||||||||||||| || |||||| Sbjct 68772 TTATTAGGTGTAGCT-TGC-TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGA 68829 Query 19091 TGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCC 19150 |||| |||||||||| || || | ||||||||| || || ||||| ||| || ||| Sbjct 68830 TGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCAGTATTCT 68889 Query 19151 TTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTA 19210 | | || ||| | || |||||| ||| || | ||||||||| ||||| ||||| Sbjct 68890 TAATTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTA 68949 Query 19211 CGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTCCACA 19270 | ||||||| |||| | |||||||| || ||||| ||||| || |||||||| ||||| | Sbjct 68950 CTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATA 69009 Query 19271 TGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTCGCTTG 19330 || ||||| ||||||||||| || || || |||| ||||| ||||||||||| |||| Sbjct 69010 TGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGTGCAATGCACGGTTCTCTTG 69069 Query 19331 TTACGTCCTCGCTT-GTGCGTGAAACTACTGAAGAGGTATCTCAGAACTATGGCTACAAG 19389 | || | || | || | ||||||||| || | |||||| ||||| || ||||| Sbjct 69070 TAACAT-CTAGTTTAATCCGTGAAACTGAAGACGGTGTATCTGCTAACTACGGTTACAAA 69128 Query 19390 TTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCGGCTT 19449 ||||| ||||||||||| ||||| ||||| || ||||| || || || ||||| || | Sbjct 69129 TTTGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTA 69188 Query 19450 ATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTGGCTGCTTGG 19509 || ||||| |||||| |||||||| ||| || |||| ||||| || ||||||||| Sbjct 69189 ATCTTCCAATACGCAAGTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCTTGG 69248 Query 19510 CCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAACTTGAAT 19569 || || || || || ||||| | || ||||| | ||||| |||||||||||||| || Sbjct 69249 CCAGTTGTAGGTATCTGGTTAACTGCTCTTGGAATTAGCACAATGGCATTCAACTTAAAC 69308 Query 19570 GGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATACTTGGGCT 19629 || || ||||| ||||| || || |||| | | | |||||||| || | ||||||||| Sbjct 69309 GGATTCAACTTCAACCAATCAGTTGTTGATAGCCAAGGTCGTGTGATCAACACTTGGGCT 69368 Query 19630 GACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCATAAC 19689 |||||| |||| |||||| | | || | || ||||||||||||||||| || || ||| Sbjct 69369 GACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAAC 69428 Query 19690 TTCCCACTTGATTTGGC 19706 ||||| || ||||| || Sbjct 69429 TTCCCTCTAGATTTAGC 69445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141147653518872