Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq25 190 2e-43 >seq25 Length=633890 Score = 190 bits (210), Expect = 2e-43 Identities = 495/749 (66%), Gaps = 7/749 (1%) Strand=Plus/Minus Query 146878 AGCTTGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCACGTGGTTG 146937 ||||| ||||| | ||| ||| ||| || ||||| |||||| | || || || || Sbjct 456363 AGCTTCGGGAAAGATCGAGGGGTCCGGGTGAGCTGCTCTTTCAGCGCGTCTACATGATTC 456304 Query 146938 AGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACG 146997 ||||| || || || ||||| | ||||| | || || || | || | ||| || Sbjct 456303 AGGTACACATGTGCATCCCCAATCGTGTGAATGAACTCTCCGGCTTTCAAGCCACAGACT 456244 Query 146998 TGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCC 147057 || || |||| | || | || | ||| ||| || ||||| || || |||| ||| Sbjct 456243 TGAGCTACCAAGCGTGTCAAGAGTGCGTAAGAGGCAATATTGAACGGCACACCCAACCCC 456184 Query 147058 ATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACTGG 147117 ||||| | || | ||| |||| ||| || |||||||| ||||| |||||||| || ||| Sbjct 456183 ATGTCTGCGGAACGCTGATACATCTGACAAGAGAGCTCTCCGTCTGCCACGTAGAATTGG 456124 Query 147118 CACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAG 147177 || | ||||| ||||||||||| ||||| || |||||||||||||||||||| Sbjct 456123 CAAAACATGTGACACGGCGGCAGGGCCATCTTTCCCAAATCCGCGGGGTTCCAGGCCGAT 456064 Query 147178 ACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAACCCACCTCAGCTGG 147237 || | | || | ||| ||||| ||| || ||| ||| || |||| Sbjct 456063 ACAATGATGCGGCGATCCTCTGGGTTGTCCTTGATGGTGGTGATTGCCCGAGCCAACTGG 456004 Query 147238 TCCACGCCCTGGCCCCCGTAGTTTGTCCCGCA-GTCCACGTACCTGGCCCCAAAGTGCCT 147296 || | ||| | ||| ||||| || | ||| |||| ||| ||||| || |||| Sbjct 456003 TCGATGCCTTTGCCAGTGTAGTCTG-CGTGCATGTCCGAATACTCCGCCCCGAAATGCCG 455945 Query 147297 CCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAGCCCGCCCG 147356 ||| ||||||||||| || || |||| || || | | ||| || | |||| Sbjct 455944 CCATTGGAAGCCGTAGACGGGGCCCAAATCCCCCTCTTCCCGGTGAGAAAGGCCCAATTT 455885 Query 147357 CTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGCGGAGAGCTC 147416 | ||| | || | || || |||||||||| || | | || | | | Sbjct 455884 GTCCAGATATTCCCGAGAGGAGTTCCCGTCCCAGATTCCAATTTTTTTCTCCTTCAAATA 455825 Query 147417 CTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCCCCTCCAAAA 147476 || | || || || || ||||||||| | || || || ||||| | |||||| Sbjct 455824 ATTCGCATCGGTCGATCCGGAGATGAACCACAAGAGTTCTTCGGCCACCCCGCGCCAAAA 455765 Query 147477 GACCCTCTTGGTGGTCAGCAGGGGGAA---CTGGTCCCTCAGCGAATACCTCGCCTGGTC 147533 ||||| ||||||||| |||| ||| || || || | ||| ||| ||| |||| | Sbjct 455764 GACCCGCTTGGTGGTGAGCAAGGGAAAGGTCTCATCACGCAGGGAAAACCGAAGCTGGGC 455705 Query 147534 CCCAAACACAGACAGCGTGCCCGTGCCCGTCCTGTCCTCCCTGCGCGTCCCGTTCTCCAA 147593 ||||| || || ||||| || ||||| |||| ||| ||| |||||| ||| | Sbjct 455704 GCCAAATTTTGAGAGGGTGCCTGTCTGCGTCCGGTCCCCCCGCCGCTTCCCGTGCTCGAT 455645 Query 147594 AATCTCCCTGACGGTGTTG-AGGTACTGG 147621 |||| |||| | || | ||||||||| Sbjct 455644 GATCT-CCTGCACGAGTCGCAGGTACTGG 455617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583483011177600