Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq6 161 1e-33 seq29 152 7e-31 seq26 123 4e-22 seq4 104 3e-16 seq16 91.5 2e-12 >seq6 Length=1241202 Score = 161 bits (178), Expect = 1e-33 Identities = 322/482 (67%), Gaps = 12/482 (2%) Strand=Plus/Plus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 ||||| |||||||||||||| |||| ||| |||||| || || ||||| || ||| || Sbjct 393908 GGCGGAGGCAAGCGCAAGGGTTCCTTCGCCATCTACCTAGAGCCCTGGCATGCAGACATC 393967 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 | | | |||||||| |||||||||||||| ||| ||| | | || || Sbjct 393968 TTTGAATTCCTGGACCTGCGTAAGAACCACGGCAA-CGAGTTGGA-----GCGTGCACGT 394021 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCGC 261967 ||||| || |||| ||| |||||| ||||||||| ||||| ||| ||| || || | | Sbjct 394022 GATCTGTTCTACGCCCTCTGGACGCCCGACCTGTTCATGCGGCGCGTGGAGAGCGACGGG 394081 Query 261968 GACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCT---GCACGAATGCTATGGCGCG 262024 |||||||| || |||||||| |||| || ||||| | ||| ||| |||| | Sbjct 394082 GACTGGTCCCTTTTTTGCCCCAACGAGTGCCCGGGCCTGGCGGACGTGTGC---GGCGAG 394138 Query 262025 GCCTTTGACGCCCTCTATGAGNNNNNNNNNNNNNNNNNNNNNNCGCGGACCGTCGTGCCC 262084 | ||| || ||||| | | || | || | Sbjct 394139 GAGTTTAACCAGCTCTACGCCAGCTACGAGAAGAGTGGGAAAGCACGCAAGGTTATTAAG 394198 Query 262085 GCACGACAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATG 262144 || | ||| |||||| || ||| | | |||| | ||||| |||||||| |||||| Sbjct 394199 GCCCAGCAGCTCTGGTTCGCGATTCTGGACTCCCAGGTGGAGACAGGCACGCCTTACATG 394258 Query 262145 GTCTACAAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG 262204 | | |||||||||| |||||||| |||||||||||| ||||||||| | | Sbjct 394259 CTGTTCAAGGACGCCTGCAACCTGAAATCAAACCAGCAGAACTTGGGCACCATCAAATCA 394318 Query 262205 GCCAACCTGTGCACCGAGATCGTCCAGTTTTCGTCGCCCACCGAGGCAAGTGTGTGCAAC 262264 |||| |||||||| |||||| || ||| |||||||| |||| || |||||| Sbjct 394319 TCCAATCTGTGCACGGAGATCATCGAGTACACGTCGCCCGATGAGGTCGCGGTCTGCAAC 394378 Query 262265 CT 262266 || Sbjct 394379 CT 394380 Score = 145 bits (160), Expect = 1e-28 Identities = 216/304 (71%), Gaps = 2/304 (1%) Strand=Plus/Plus Query 259883 ACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCC 259942 |||||| | |||||||| | | ||||| || ||||| || || || |||||| Sbjct 393608 ACCTACAATCTCATGTCGCTCAAACTTTTCACGCATGCTACGCCTACACTTTTCAATGCC 393667 Query 259943 GGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATC 260002 ||||| ||||| || || || || ||||| || || |||||||| || || ||| Sbjct 393668 GGCACACCGCGGCCCCAACTCTCCTCCTGCTTCCTCCTGACCATGAAGGAGGACTCCATC 393727 Query 260003 GAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATC 260062 || |||||||| ||||| |||||||| ||||| ||| ||||| || || || || Sbjct 393728 GACGGCATCTACGACACCCTCAAGCAATGCGCTGCCATTTCCAAATTTGCGGGTGGGATT 393787 Query 260063 GGTTTTGCCGCACACAAGGTGCGCGCCGCG-GGCGCCTACGTGGCGGGCACCAACGGCCA 260121 || | || ||||| | || | |||| | | ||||| | || | |||||| Sbjct 393788 GGCGTATCCATCCACAACATTCG-GGCGCGAGACTCCTACATTCGTGGATCGAACGGCAC 393846 Query 260122 GTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCA 260181 ||||||||| | || || ||||| |||||||| ||||| ||||| |||||||||||||| Sbjct 393847 CTCCAACGGCATCGTACCTATGCTCCGCGTTTTCAACGATACGGCCCGCTACGTCGACCA 393906 Query 260182 GTGC 260185 | || Sbjct 393907 GGGC 393910 >seq29 Length=316797 Score = 152 bits (168), Expect = 7e-31 Identities = 216/301 (72%), Gaps = 2/301 (1%) Strand=Plus/Minus Query 259883 ACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGC 259941 ||||||||| |||| ||| || || ||||| | || | || || || || | || Sbjct 131555 ACCTACGAGCTCATGA-GCAACAAGTGGTTCATCCACGCCTCCCCTACTCTTTTCCACGC 131497 Query 259942 CGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGAT 260001 ||||||| |||||||| || |||||||| || ||| |||| | || || ||||| Sbjct 131496 GGGCACGCGTTTCCCGCAGATGTCCTCGTGCTTCCTCCTGGCCATGCAAGCGGACTCGAT 131437 Query 260002 CGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCAT 260061 || || ||||| |||||||| ||||||||||| | || ||||||||| || || || Sbjct 131436 CGTTGGTATCTACGACACGCTGAAGCAGTGCGCCGTGATAAGCAAGGCGGCGGGGGGAAT 131377 Query 260062 CGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCA 260121 ||| | | | ||||| | ||||| ||||||||| | |||||| || || Sbjct 131376 CGGCCTCTCGGTCCACAACATCCGCGCGCACGGCGCCTACATTAAGGGCACGAAGGGGAC 131317 Query 260122 GTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCA 260181 | |||||| || ||||||||||| | || || ||| ||||||||||||||| ||||| Sbjct 131316 GAGCAACGGTCTGGTGCCCATGCTCAGGGTCTTCGACGTCACGGCGCGCTACGTGGACCA 131257 Query 260182 G 260182 | Sbjct 131256 G 131256 Score = 107 bits (118), Expect = 3e-17 Identities = 301/453 (66%), Gaps = 26/453 (6%) Strand=Plus/Minus Query 261788 GGCGGCGGCAAGCG-CAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCT 261846 || || |||||| | | |||| ||||||||| ||||||||| ||||||||||| ||| | Sbjct 131255 GGGGGAGGCAAGAGGCCAGGG-GCCTTTGCCATCTACCTGGAGCCGTGGCACGCGGACAT 131197 Query 261847 CATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCG 261906 | | | ||||||||| ||||||||||| |||| ||| || | |||||||| | Sbjct 131196 CTTTGAAGTGCTGGACCTGCGGAAGAACCACGGAAAGG-AGGAGGCG---CGGGCGCGGG 131141 Query 261907 CGATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCG 261966 ||||||| || || || |||| |||||| || ||| | ||| | || | Sbjct 131140 --ATCTCTTCTATGGACTATGGATTCCCGACCTCTTCATGGAGAGGGTGGAGGA-GGATG 131084 Query 261967 CGAC-TGGTCGCTCTTTTG-CCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCG 262024 ||| ||||| ||| | || |||| | || ||||| || || ||| | ||| | Sbjct 131083 GGACCTGGTCCCTCATGTGTCCCGATCAGTGC-CCCGGTCTCGCGGACTGCCACGGCCAG 131025 Query 262025 GCCTTTGACGCCCTCTATG---AGNNNNNNNNNNNNNNNNNNNNNNCGCGGACCGT-CGT 262080 ||||| | ||| ||| | | ||| || ||| Sbjct 131024 GCCTTCCGGGACCTATATTTAAAATACGAACGAGAGGGCCGAGTCAAGAAGACAGTGCGT 130965 Query 262081 GCCCGCACGACAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTA 262140 || | | ||| | |||| ||||| | | | || || ||||| ||||||||||| Sbjct 130964 GCTC--AGGACT--TGTGGTTTGCCATCTTGGACTCGCAGATTGAGACGGGCACGCCCTA 130909 Query 262141 CATGGTCTACAAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGAC 262200 |||| | ||||||||||| |||||||| |||||||| |||||| ||||||||| | Sbjct 130908 CATGCTGTACAAGGACGCTTGCAACCTGAAGAGCAACCAACAGAACTTGGGCACCATCA- 130850 Query 262201 AGAGGCC---AACCTGTGCACCGAGATCGTCCA 262230 || || || |||||||||||||||||||| Sbjct 130849 --AGTCCTCGAATCTGTGCACCGAGATCGTCCA 130819 >seq26 Length=478243 Score = 123 bits (136), Expect = 4e-22 Identities = 171/238 (72%), Gaps = 6/238 (3%) Strand=Plus/Minus Query 724905 TCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAAC 724964 |||| |||||||||||||||||||||||||| ||| || | | ||| ||||| Sbjct 350706 TCCTACATCTACAAGGTGCTCAAGCAGGTGCATCCCGACACTGGT-----ATC-TCCAAG 350653 Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 | || ||| ||||||| || || ||||| |||||||| ||| ||| ||| Sbjct 350652 CGTGGTGTTTCCATCCTGAACTCCTTCATCGGTGACATTTTCGACCGCCTCGCCACGGAG 350593 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 || || ||||| || | || |||| ||| || | | |||||||||||||| Sbjct 350592 GCTGGCAAGCTGGCTCGTTACACCAAGAAGTCCACCCTCTCCTCCCGCGAGATCCAGACG 350533 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || ||||||| ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 350532 GCTGTCCGCCTGACGCTGCCCGGTGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 350475 >seq4 Length=1364975 Score = 104 bits (114), Expect = 3e-16 Identities = 129/174 (74%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||||| |||||| || ||| ||||||||||||| ||||| ||||| ||| |||||| Sbjct 237189 GATCTGGGATATGTACAAACAAG-CCGAGGCCTCCTTCTGGACGGCCGAAGAGCTCGACC 237247 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGC 1455894 ||| | ||||| | |||||| | | | ||| |||| || || || || | Sbjct 237248 TCGCCCACGACAAGACGGACTGGGAAAAGTTAACGGACAACGAACGTCACTTTGTCTCAC 237307 Query 1455895 ACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCC 1455948 ||||||||||| || ||||||||| || ||||| ||| |||||| ||||| Sbjct 237308 ACGTCCTCGCC-TTCTTCGCCGCCTCGGACGGCATTGTGAACGAGAATTTGGCC 237360 >seq16 Length=710462 Score = 91.5 bits (100), Expect = 2e-12 Identities = 127/173 (73%), Gaps = 9/173 (5%) Strand=Plus/Plus Query 1817561 CCTCGGCGCGCGCGTC-TCAGACTGGGGCACATGGAGGTTCATCTCGTCGCCGTCAAAGT 1817619 |||| || ||||| || || | |||||||| || | |||||||||||||||||| |||| Sbjct 192299 CCTCCGCCCGCGCCTCCTCCGTCTGGGGCAGGTGCATGTTCATCTCGTCGCCGTCGAAGT 192358 Query 1817620 CGGCATTGTAGGTGCCCG-TGACGGCCAGGTTGAACCGCATGGTACGGCCGGGCATGGGC 1817678 |||| ||||||| || || ||| | |||||| || | ||| || | ||||||| | Sbjct 192359 CGGCGTTGTAGG-GCGCGCACACGCACTCGTTGAAGCGGAAGGTCCGCCAGGGCATGACC 192417 Query 1817679 ACCACCTTGTG---CATGAGCATGGAGCCCATGTGGAGTGAGGGCTGCCGGTT 1817728 ||| ||| |||| |||||| | |||| || |||||||| ||||| Sbjct 192418 TTGACCCGGTGGGCCATG---ATGGAGAGCTTGTGCAGGGAGGGCTGTCGGTT 192467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177745226942808