Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq9 109 6e-19 seq4 109 6e-19 seq29 105 7e-18 seq3 98.7 1e-15 seq6 91.5 1e-13 >seq9 Length=1164708 Score = 109 bits (120), Expect = 6e-19 Identities = 130/174 (75%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || |||||||| ||||| |||||||| | ||||||||||| || || || || || || Sbjct 608021 TCCTCGAGCTGCTTGCCGGCAAAAATGAGGCGCTGCTGATCAGGGGGGATCCCCTCCTTG 608080 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 || || || ||||| || || || | |||||| | |||||||| | ||||||| Sbjct 608081 TCCTGGATCTTTTGCTTCACATTCTCAATGGTGTCGCTGGGCTCCACGTCCAAAGTAATG 608140 Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT-TTTGTTTTTGT-TCAACG 134730 || || || || | || ||||||||||||||||| ||||| ||| |||||| Sbjct 608141 GTCTTGCCCGTCAGGGTCTTAACGAAAATTTGCATGGCTGTTTATGTATCAACG 608194 >seq4 Length=1364975 Score = 109 bits (120), Expect = 6e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 134498 TCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAG 134556 ||||| || | ||||| || || || || |||||||||||||| | |||| ||| | Sbjct 829206 TCGCAGGACCAAATGTAGGGTAGACTCTTTCTGAATGTTGTAGTCAGACAAC-GTGCGCC 829264 Query 134557 AGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTT 134616 ||| || ||||| || || |||||||| | ||||||||||| || || || || || | Sbjct 829265 CGTCCTCCAGCTGCTTCCCCGCAAAAATGAGGCGCTGCTGATCAGGGGGGATACCCTCCT 829324 Query 134617 TTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAA 134676 | || ||||| || || || || || | ||||| | ||||||||||| || | Sbjct 829325 TGTCCTGAATCTTCTGCTTCACATTCTCGATCGTGTCACTGGGCTCCACGTCGAGCGTGA 829384 Query 134677 TGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||| || || || | || ||||| || |||||||| Sbjct 829385 TGGTCTTGCCCGTCAGCGTCTTAACAAAGATTTGCAT 829421 >seq29 Length=316797 Score = 105 bits (116), Expect = 7e-18 Identities = 612/965 (63%), Gaps = 41/965 (4%) Strand=Plus/Minus Query 7464 CGTGCGCCACGAGCGCGATTACGATTACCGT---TATTTTGCCGTAAAAACTTTAAAAAA 7520 ||| || |||||||||||||| || | | ||||| | | | ||||| | || Sbjct 131718 CGTCCGACACGAGCGCGATTA---TTTCTTTGACTATTTCGGCTTCAAAACCATGGAACG 131662 Query 7521 CGGCTACTTGTTGAAAATCAACGGCGAATGC--GCGGAACGAATTCAACACATGCTGTTG 7578 | ||||||| |||| ||| |||| | | | ||| || || ||||||| || Sbjct 131661 AGCCTACTTGCTGAAGATCG--GGCGCAAGGTGGTGGAGCGCCCGCAGTACATGCTTCTG 131604 Query 7579 CGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATG 7638 ||||| || | || || || || || || | |||||||||||| || ||| | | Sbjct 131603 CGCGTTGCCCTTGGTATCCATGGAGAGGATCTGCCCGCCGCCTTGGAGACCTACGAGCTC 131544 Query 7639 ATGTCTTTGAAACA----GTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAA 7694 ||| | |||| ||| | ||||| || || || | || ||||||||| Sbjct 131543 ATGA----GCAACAAGTGGTTCATCCACGCCTCCCCTACTCTTTTCCACGCGGGCAC--- 131491 Query 7695 CGCG----CCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACG 7750 ||| || || |||||||||| || | || |||||| | ||| |||| | Sbjct 131490 -GCGTTTCCCGCAGATGTCCTCGTGCTTCCTCCTGGCCATGCAAGCGGACTCGATCGTTG 131432 Query 7751 GCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGG-AATAGGT 7809 | || ||| |||||||| | |||||| || ||| |||||| || ||| || Sbjct 131431 GTATCTACGACACGCTGAAGCAGTGCGCCGTGATAAGCAAGG-CGGCGGGGGGAATCGGC 131373 Query 7810 CTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCC 7869 || || || || | ||||| |||| | ||| | ||| || || | | Sbjct 131372 CTCTCGGTCCACAACATCCGCGCGCACGGCGCCTACATTAAGGGCACGAAGGGGACGAGC 131313 Query 7870 AGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGG 7929 | |||| | | ||||||| | | || ||| | | ||| ||| | || ||||||||| Sbjct 131312 AACGGTCTGGTGCCCATGCTCAGGGTCTTCGACGTCACGGCGCGCTACGTGGACCAGGGG 131253 Query 7930 GGA---AAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGACATTTAC 7986 ||| ||| | ||| ||| ||||||||| |||||||||||||||||||||| | Sbjct 131252 GGAGGCAAGAGGCCAGGGGCCTTTGCCATCTACCTGGAGCCGTGGCACGCGGACATCTTT 131193 Query 7987 GCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGACAGCAAAGCGCGCGATCTATTC 8046 | |||||| | ||||| ||| || || || ||||| ||||| ||| Sbjct 131192 GAAGTGCTGGACCTGCGGAAGAACCACGGAAAGGAGGAGGCGCGGGCGCGGGATCTCTTC 131133 Query 8047 TTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCACAATGGTCG 8106 | ||| | ||| | ||||| || || ||| | | || | || | ||||| Sbjct 131132 TATGGACTATGGATTCCCGACCTCTTCATGGAGAGGGTGGAGGAGGATGGGACCTGGTCC 131073 Query 8107 CTCATGTGCCCCGATCGTTGCCCTTTATTAAAAAACGTTTACGGTTCAAAATTT---GAA 8163 |||||||| ||||||| ||||| | || |||| || || | | Sbjct 131072 CTCATGTGTCCCGATCAGTGCCCCGGTCTCGCGGACTGCCACGGC-CAGGCCTTCCGGGA 131014 Query 8164 CAATTGTACAAACAATACGAACACGACGGC-GCGTACGTGCGGCAAGTGAAAGCGCGCGA 8222 | | | ||| |||||||| || ||| | || | | | |||| || | || Sbjct 131013 CCTATATTTAAA--ATACGAACGAGAGGGCCGAGT-CAAGAAGACAGTGCGTGCTCAGGA 130957 Query 8223 CCTGCACCGCGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAA 8282 | || ||||| | || | || | || || || | ||| |||||||||||||| Sbjct 130956 CTTGTGGTTTGCCATCTTGGACTCGCAGATTGAGACGGGCACGCCCTACATGCTGTACAA 130897 Query 8283 AGACGCTTGCAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCT 8342 |||||||||||| || ||||| ||| ||| |||||||||| | | ||||| Sbjct 130896 GGACGCTTGCAACCTGAAGAGCAACCAACAGAACTTGGGCACCATCAAGTCCTCGAATCT 130837 Query 8343 GTGCGCTGAAATTGTACAGTACA-GCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGT 8401 |||| | || || || || |||| | ||| | || || ||||| || ||||| || |||| Sbjct 130836 GTGCACCGAGATCGTCCAATACACGAGCG-CGGAAGAGGTGGCGGTCTGCAACCTGGCGT 130778 Query 8402 CGGTG 8406 ||||| Sbjct 130777 CGGTG 130773 >seq3 Length=1384164 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGA 134557 ||||| || | ||| | || || || || |||||||||||||| | || || || | Sbjct 138226 CGCAAGACCAAGTGCAAGGTTGACTCTTTCTGAATGTTGTAGTCAGACAGCG-TGCGTCC 138168 Query 134558 GTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTT 134617 ||| || ||||| || ||||| ||||| | |||||||||||||| || ||||| || || Sbjct 138167 GTCTTCCAGCTGCTTTCCTGCGAAAATTAGGCGCTGCTGATCGGGGGGAATGCCCTCCTT 138108 Query 134618 TTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAAT 134677 |||||||| ||||| || || || | || ||| | || || || | || || Sbjct 138107 GTCTTGAATCTTTTGCTTCACATTTTCGATGGTATCGCTGGGCTCGACATCCAATGTGAT 138048 Query 134678 GGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||| || || || | || || ||||| || ||||| Sbjct 138047 GGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 138012 >seq6 Length=1241202 Score = 91.5 bits (100), Expect = 1e-13 Identities = 362/561 (65%), Gaps = 9/561 (2%) Strand=Plus/Plus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 || |||||| | |||| ||||| | || || ||| || |||||||||| || || Sbjct 393545 CAGCACATGATCATGCGTGTGGCAATTGGTATCCACAAAGAGAACATTGACGCGGCGCTG 393604 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 || || ||| | | ||||| | |||| || ||||| ||| |||| || | || Sbjct 393605 GAGACCTACAATCTCATGTCGCTCAAACTTTTCACGCATGCTACGCCTACACTTTTCAAT 393664 Query 7684 GCGGGCACAAACGCG-CCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAG 7742 || |||||| |||| || ||| | ||||| || || | || |||||| || ||| Sbjct 393665 GCCGGCACAC-CGCGGCCCCAACTCTCCTCCTGCTTCCTCCTGACCATGAAGGAGGACTC 393723 Query 7743 CATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGG 7802 |||||||||||| ||| |||| || | ||||| |||||||||| | || || Sbjct 393724 CATCGACGGCATCTACGACACCCTCAAGCAATGCGCTGCCATTTCCAAATTTGCGGGTGG 393783 Query 7803 AATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCA-TCGTGTCCACCAACG 7861 || || | | | || || | || || | | || ||||| | |||| Sbjct 393784 GATTGGCGTATCCATCCACAACATTCGGGCGCGAGACTCCTACATTCGTG-GATCGAACG 393842 Query 7862 GAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAG 7921 | | ||| ||| | | || ||| | ||||| ||||| | ||| || | || | Sbjct 393843 GCACCTCCAACGGCATCGTACCTATGCTCCGCGTTTTCAACGATACGGCCCGCTACGTCG 393902 Query 7922 ACCAGGGGGGA---AAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGG 7978 ||||||| ||| |||||||| || || |||||||| | ||||| ||||| || | Sbjct 393903 ACCAGGGCGGAGGCAAGCGCAAGGGTTCCTTCGCCATCTACCTAGAGCCCTGGCATGCAG 393962 Query 7979 ACATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGA-AGACAGCAAAGCGCGC 8037 |||| | | | | || | |||||| ||| || ||| ||| || || Sbjct 393963 ACATCTTTGAATTCCTGGACCTGCGTAAGAACCACGGCAACGAGTTGGAGC-GTGCACGT 394021 Query 8038 GATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCA 8097 ||||| |||| || | ||| |||||| ||||| ||| ||||||| | ||||| Sbjct 394022 GATCTGTTCTACGCCCTCTGGACGCCCGACCTGTTCATGCGGCGCGTGGAGAGCGACGGG 394081 Query 8098 CAATGGTCGCTCATGTGCCCC 8118 | ||||| || | |||||| Sbjct 394082 GACTGGTCCCTTTTTTGCCCC 394102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505394078843680