Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq684 744 0.0 >seq684 Length=114989 Score = 744 bits (824), Expect = 0.0 Identities = 739/954 (77%), Gaps = 6/954 (1%) Strand=Plus/Plus Query 157703 AACCGTTTGTATGTTGGTTGGTTCGGTGTACTGATGATTCCTACGTTGCTTGCTGCAACT 157762 |||||||| || | |||||||||||||| | ||||| ||||| || | | || || Sbjct 68490 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCTACATTATTAACAGCTACA 68549 Query 157763 ATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATTGACGGCATCCGCGAA 157822 | ||| |||||| |||| ||| |||| || || || || || || || || ||||| ||| Sbjct 68550 AGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAA 68609 Query 157823 CCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTAGT 157882 ||||| ||||| ||||| | || || |||||||| ||| | ||||| ||| |||| ||| Sbjct 68610 CCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCGGTTATTCCAAGT 68669 Query 157883 TCAAACGCAATCGGTCTCCACTTCTACCCCATCTGGGAAGCAGCATCTCTTGACGAGTGG 157942 || ||||| || ||| | ||||||||||| | |||||||| || ||| | ||||| ||| Sbjct 68670 TCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGG 68729 Query 157943 CTGTATAACGGTGGTCCTTTCCAACTTGTAGTATTCCACTTCCTGATCGGCATCTATGCC 158002 || || ||||||||||||| ||||||||||||||| |||||| | | || | | | Sbjct 68730 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGC 68789 Query 158003 TATATGGGACGTGAGTGGGAACTCTCTTACCGTTTAGGTATGCGCCCATGGATCTGTGTA 158062 || ||||||||||| |||||||| ||||||||||| ||||| || ||||| | ||| Sbjct 68790 TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTA 68849 Query 158063 GCATATTCTGCTCCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTCTATCCTTTCGGTCAA 158122 || | || |||||||| |||||||| |||||||||||| || | || || |||| ||| Sbjct 68850 GCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCAGTATTCTTAATTTACCCAATCGGACAA 68909 Query 158123 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTA 158182 ||| ||||| |||| ||||||| | ||||||||||||||||| |||| |||| | ||| Sbjct 68910 GGTAGCTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCATGTTAGTA 68969 Query 158183 TTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTA 158242 |||||||||||||||||||| ||||||||||| ||||||||| ||||||||||| || Sbjct 68970 TTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTG 69029 Query 158243 TTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTCGT 158302 || ||||||||| | ||| ||| ||||| || ||| || || || | | ||| Sbjct 69030 TTTGGTGGATCTTTATTCAGTGCAATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGT 69089 Query 158303 GAAACGACTGAA-ACAGAGTCACAG--AACTACGGTTATAAGTTCGGTCAAGAAGAAGAG 158359 ||| |||||| || | || | | ||||||||||| || || || ||||||||||| Sbjct 69090 GAA---ACTGAAGACGGTGTATCTGCTAACTACGGTTACAAATTTGGACAAGAAGAAGAA 69146 Query 158360 ACCTACAACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCA 158419 || ||||||||||| || || || || ||||| || ||||| |||||||||||||| Sbjct 69147 ACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCAAGT 69206 Query 158420 TTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGG 158479 ||||||||||| ||| | || ||||||||| | ||||| ||||| ||||| || |||||| Sbjct 69207 TTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGG 69266 Query 158480 TTCACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAG 158539 || || || ||||| | || |||||||||||| | ||||| |||||||||||||| Sbjct 69267 TTAACTGCTCTTGGAATTAGCACAATGGCATTCAACTTAAACGGATTCAACTTCAACCAA 69326 Query 158540 TCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCT 158599 || | ||||| | || ||||||||| | ||||| ||||| || | | ||||| ||| Sbjct 69327 TCAGTTGTTGATAGCCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCAACCGTGCT 69386 Query 158600 GGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTGGAT 158653 | | | ||||||||||| ||||| || |||||||| ||||||||||| || ||| Sbjct 69387 GATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGAT 69440 Score = 551 bits (610), Expect = 6e-152 Identities = 725/1002 (72%), Gaps = 2/1002 (0%) Strand=Plus/Plus Query 159391 GATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTCTT 159450 ||||||||| | ||||||||||| || || ||| | |||||||| || || || | || Sbjct 37918 GATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGTCTTTTATTATTT 37977 Query 159451 CCCACTGCTTATATGGCCATTGGCGGTTGGCTTACTGGCACGACTTTTATCACGAGTTGG 159510 || || || | | | || |||| || ||| | || || || |||||| | || |||| Sbjct 37978 CCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTTGTTACATCTTGG 38037 Query 159511 TACACCCACGGTCTTGCTAGTTCCTACCTTGAAGG-TGCTAATTTTCTCACGGCAGCTGT 159569 ||||| || || | ||| ||| ||| | || || ||| || || | || | |||||| Sbjct 38038 TACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGC-AACTTCTTAACTGTAGCTGT 38096 Query 159570 CTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 159629 ||||| ||||| || |||||||||||| | | || | ||||| || ||| | || Sbjct 38097 ATCAACACCTGCAAATAGTATGGGTCATTCATTGATCTTATTATGGGGACCAGAGGCACA 38156 Query 159630 AGGCGACTTCCAACGCTGGTGCCAACTTGGAGGGATTTGGTCCTTTGTTGCTCTCCACGG 159689 ||| || || || ||| ||| | || || | ||| | ||||| || | || || Sbjct 38157 AGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTTGTCGCATTACATGG 38216 Query 159690 TGCATTCGCTCTCATAGGTTTTATGCTACGGCAATTTGAAATTGCTCGTCTAGTTGGTAT 159749 ||||| | | || || || |||| |||||||||||||||||||| || ||||| Sbjct 38217 GGCATTTGGATTAATTGGATTCTGTTTACGACAATTTGAAATTGCTCGTCTTGTAGGTAT 38276 Query 159750 CCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTATTCCT 159809 ||||| || ||||| ||||| || || || ||||| || || || || |||||| | Sbjct 38277 TCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATTCGTTTCTGTATTCTT 38336 Query 159810 TATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAAT 159869 |||||||| | || || | ||||||||||| |||||||| || || ||||| || Sbjct 38337 AATCTATCCTTTAGGACAAGCAAGTTGGTTCTTTGCTCCTAGTTTTGGAGTTGCAGCTAT 38396 Query 159870 CTTTAGATTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATAT 159929 || ||||||| || ||| | || |||||||| |||||||| || || || ||||| || Sbjct 38397 TTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCACAT 38456 Query 159930 GATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTGTGTGCAATCCATGGTGCTACTGT 159989 |||||| || || || || ||||||| ||||| || | |||||| ||||| |||||||| Sbjct 38457 GATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCTGCAATTCATGGAGCTACTGT 38516 Query 159990 AGAGAACACATTGTTTGAAGATGGAGAACAAGCAAACACATTTAAGGCGTTTGAGCCTAC 160049 ||| |||||||| || |||||||| || || || ||||| || || || || Sbjct 38517 AGAAAACACATTATTCGAAGATGGTGATGCTGCGAATACATTCCGTGCTTTCACACCAAC 38576 Query 160050 TCAAGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGG 160109 ||| |||||| |||||||| ||||| || || ||| | |||||||| || || || || Sbjct 38577 ACAATCAGAAGAAACTTATTCAATGGTAACAGCGAACAGATTCTGGTCTCAAATTTTTGG 38636 Query 160110 TGTTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGG 160169 |||||| ||||||||||| || ||||||||||| |||||||| ||||| || || | || Sbjct 38637 TGTTGCTTTTTCTAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCAGTAACAGG 38696 Query 160170 TCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTTTCAACCTTCGTGCTTACGATTT 160229 | |||||||| ||| |||| || | ||| | || || ||| | | || || || || Sbjct 38697 TTTATGGACAAGTTCTTTTGGTATAGTAGGTTTAGCATTAAACTTAAGAGCATATGACTT 38756 Query 160230 CGTGAGTCAGGAGATTAGAGCAGCAGAAGATCCTGAATTTGAGACCTTCTACACCAAGAA 160289 || ||| ||| || | ||||| |||||||| |||||||| || ||||| || || || Sbjct 38757 TGTATCTCAAGAGCTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTATACTAAAAA 38816 Query 160290 CATCCTATTGAATGAAGGACTTCGTGCTTGGATGGCACCTGCTGATCAACCACATGAAAA 160349 ||| |||| || ||||| || | | |||||||| | || |||||||||||||| Sbjct 38817 TATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAGGACCAACCACATGAAAA 38876 Query 160350 CTTTATCTTCCCTGAGGAAGTACTACCTAGAGGTAACGCACT 160391 ||| | ||||| ||||| || |||| | || ||||| || Sbjct 38877 TTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCT 38918 Score = 98.7 bits (108), Expect = 1e-15 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 158821 TTATTCAGTGTGAGTCCGATCAGTACATTCTAGACGCTGCAGAAGAGGCAGGAGTTGATA 158880 ||||| | ||||| |||| | |||||| |||| ||||||||||| ||| |||| | Sbjct 18861 TTATTGATTGTGATGACGATGAATACATTTTAGATGCTGCAGAAGAAAACGGATTTGA-A 18919 Query 158881 TTAAC-TATTCCTGTCGTGCTGGTGCCTGTTCTTCCTGTGCTGGTAAACTTGTCAGCGGA 158939 || | ||||| ||| | ||||| | ||||| | ||||| || | || | || Sbjct 18920 CTACCTTATTCTTGTAGATCTGGTTCTTGTTCAACTTGTGCAGGACGTGTAGTAGGTGGT 18979 Query 158940 ACTGTTGACCAAAGCGATCAGTCATTCTTGGATGATGATCAGATTGCAGAAGGATTTATC 158999 || |||| ||| || ||||| || || || || ||||| ||||||||||||| | Sbjct 18980 ACAATTGATCAATCAGAACAGTCGTTTTTAGAAGACGATCAAGTTGCAGAAGGATTCGTA 19039 Query 159000 CTTACGTGTGTATCTTATCCCACTTCTGATTGT 159032 | || ||||| |||||||| | ||||||||| Sbjct 19040 TTAACTTGTGTTGCTTATCCCGCATCTGATTGT 19072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 573019100644800