Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq684 710 0.0 >seq684 Length=114989 Score = 710 bits (786), Expect = 0.0 Identities = 735/957 (77%), Gaps = 12/957 (1%) Strand=Plus/Plus Query 181008 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACT 181067 ||||| | || ||||||||||||| || | ||||| || || | || |||| || Sbjct 68490 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCTACATTATTAACAGCTACA 68549 Query 181068 ATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAA 181127 | ||| |||||| |||| ||| |||| || || || || || ||||| || ||||||||| Sbjct 68550 AGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAA 68609 Query 181128 CCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCT 181187 || || ||||| ||||| | || || |||||||| ||| | ||||| ||| ||||| | Sbjct 68610 CCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCGGTTATTCCAAGT 68669 Query 181188 TCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGG 181247 || ||||| |||||| |||||||||| || | |||||||| || || | || || ||| Sbjct 68670 TCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGG 68729 Query 181248 CTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATTTA---T 181304 || || ||||||||||||| |||||| ||||| || |||||| | | || | || | Sbjct 68730 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGG--TGTAGCTT 68787 Query 181305 GCATACATGGGACGTGAATGGGAACTCTCTTACCGCTTAGGTATGCGCCCCTGGATCTGT 181364 || ||||||||||||||||||||||| ||||| ||||| ||||| || ||||| | Sbjct 68788 GC-TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTC 68846 Query 181365 GTTGCATACTCTGCTCCAGTCGCAGCAGCATCTGCTGTATTCCTAGTCTATCCTTTCGGT 181424 || || | ||| |||||||| || |||||| ||| |||||| || | || || |||| Sbjct 68847 GTAGCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCAGTATTCTTAATTTACCCAATCGGA 68906 Query 181425 CAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTT 181484 |||||| |||||||| | ||||| | || ||||||||||| ||||||| |||| | Sbjct 68907 CAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCATGTTA 68966 Query 181485 GTTTTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGT 181544 || ||||||||||| ||||||||||| ||||| || ||||| ||| ||||| || ||| Sbjct 68967 GTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGT 69026 Query 181545 GTATTTGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTC 181604 || |||||||| || | ||||||||||||||||||||| | || |||||| | || Sbjct 69027 GTGTTTGGTGGATCTTTATTCAGTGCAATGCACGGTTCTCTTGTAACATCTAGTTTAATC 69086 Query 181605 CGTGAGACGACTGAA-ACTGAGTCACAG--AACTATGGTTACAAGTTCGGACAAGAAGAA 181661 ||||| || |||| || | || | | ||||| |||||||| || |||||||||||| Sbjct 69087 CGTGAAAC---TGAAGACGGTGTATCTGCTAACTACGGTTACAAATTTGGACAAGAAGAA 69143 Query 181662 GAGACATACAACATCGTCGCCGCCCACGGTTACTTTGGTCGCTTGATCTTCCAATATGCT 181721 || || ||||||||||| || || |||||||||||||| || || ||||||||||| || Sbjct 69144 GAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCA 69203 Query 181722 TCATTCAACAACTCACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATC 181781 ||||||||||||||| | | ||||||||| | || || ||||| || || || ||| Sbjct 69204 AGTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATC 69263 Query 181782 TGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTAACCTCAATGGATTCAACTTCAAC 181841 ||||| || || || || | ||||| |||||||| ||| | || ||||||||||||||| Sbjct 69264 TGGTTAACTGCTCTTGGAATTAGCACAATGGCATTCAACTTAAACGGATTCAACTTCAAC 69323 Query 181842 CAGTCTATCCTCGACGGACAAGGACGTGTCCTCAACACCTGGGCAGACGTGCTCAACCGT 181901 || || | | || | ||||| ||||| ||||||| ||||| ||| | |||||||| Sbjct 69324 CAATCAGTTGTTGATAGCCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCAACCGT 69383 Query 181902 GCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACGCGCACAACTTCCCGCTTGAT 181958 || | | | || |||||||| |||||||| || ||||||||||||||||| || ||| Sbjct 69384 GCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGAT 69440 Score = 419 bits (464), Expect = 3e-112 Identities = 700/1004 (70%), Gaps = 6/1004 (1%) Strand=Plus/Plus Query 182373 GACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTCTT 182432 || |||||| | ||||| ||||| || || ||| | |||||||| || || || | || Sbjct 37918 GATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGTCTTTTATTATTT 37977 Query 182433 CCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTTGG 182492 || || || | |||||| |||| || ||| | || || || |||||||||| |||| Sbjct 37978 CCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTTGTTACATCTTGG 38037 Query 182493 TACACCCACGGTCTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTTACGGCAGCTGT 182551 ||||| || || | |||||||| || | || || ||| ||||| | || | |||||| Sbjct 38038 TACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGC-AACTTCTTAACTGTAGCTGT 38096 Query 182552 CTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 182611 || || ||||| || |||||||||||| | | || | ||||| || ||| | || Sbjct 38097 ATCAACACCTGCAAATAGTATGGGTCATTCATTGATCTTATTATGGGGACCAGAGGCACA 38156 Query 182612 GGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGG 182671 || |||| || ||| ||| | || ||| | |||| ||| || || | || || Sbjct 38157 AGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTTGTCGCATTACATGG 38216 Query 182672 TGCCTTCGCTCTCATTGGTTTCATGCTTA-GGCAATTTGAACTTGCTCGCCTGATTGGAA 182730 || || | | ||||| ||| || ||| | ||||||||| ||||||| || | || | Sbjct 38217 GGCATTTGGATTAATTGGATTC-TGTTTACGACAATTTGAAATTGCTCGTCTTGTAGGTA 38275 Query 182731 TCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTGTTCC 182790 | | || || ||||| ||||| ||||| || ||||| || |||||||| ||| ||| Sbjct 38276 TTCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATTCGTTTCTGTATTCT 38335 Query 182791 TCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGA 182850 | ||||||||||| ||||| | |||||| || || || ||||| || || || | Sbjct 38336 TAATCTATCCTTTAGGACAAGCAAGTTGGTTCTTTGCTCCTAGTTTTGGAGTTGCAGCTA 38395 Query 182851 TCTTCAGGTTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACACTCAACCCCTTCCATA 182910 | ||| | ||||| || ||| | || |||||||| ||||||||||| || || ||||| | Sbjct 38396 TTTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCACA 38455 Query 182911 TGATGGGAGTTGCTGGTATACTGGGTGGAGCACTGCTCAGTGCTATCCATGGTGTCACAG 182970 ||||||| || || || || | ||||| ||||| | ||| || ||||| | || | Sbjct 38456 TGATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCTGCAATTCATGGAGCTACTG 38515 Query 182971 TAGAGAATACCTTGTATGAAGATGGAGAACAGGCAAACACATTTAAAGCGTTCGATTCCA 183030 |||| || || || | |||||||| || || || ||||| || ||| | | Sbjct 38516 TAGAAAACACATTATTCGAAGATGGTGATGCTGCGAATACATTCCGTGCTTTCACACCAA 38575 Query 183031 CTCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAATCTTCG 183090 | || || || || ||||| ||||| |||||||| | || ||||| ||||| || | Sbjct 38576 CACAATCAGAAGAAACTTATTCAATGGTAACAGCGAACAGATTCTGGTCTCAAATTTTTG 38635 Query 183091 GGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGG 183150 | ||||| ||| || || |||||| | || ||||| ||||| |||||||| || | | Sbjct 38636 GTGTTGCTTTTTCTAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCAGTAACAG 38695 Query 183151 GTCTTTGGGTCTCTTCTATTGGGATCATTGGGCTTGCTCTTAATCTT-CGTGCTTATGAT 183209 || | ||| |||| |||| || | | || || |||| ||| | || ||||| Sbjct 38696 GTTTATGGACAAGTTCTTTTGGTAT-AGTAGGTTTAGCATTAAACTTAAGAGCATATGAC 38754 Query 183210 TTTGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACAAAG 183269 ||||| ||||||| || | ||||| |||||||| || || || || ||||| || || Sbjct 38755 TTTGTATCTCAAGAGCTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTATACTAAA 38814 Query 183270 AACATCCTTCTCAATGAAGGACTACGTGCTTGGTTGGCACCTGCCGATCAACCACATGAA 183329 || ||| | | || ||||| | | | ||| |||| | || |||||||||||| Sbjct 38815 AATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAGGACCAACCACATGAA 38874 Query 183330 AACTTCATCTTCCCTGAAGAAGTTCTACCTAGAGGTAACGCACT 183373 || || | ||||| || || ||| |||| | || ||||| || Sbjct 38875 AATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCT 38918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614612345019520