Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq684 717 0.0 >seq684 Length=114989 Score = 717 bits (794), Expect = 0.0 Identities = 760/996 (76%), Gaps = 8/996 (1%) Strand=Plus/Plus Query 174459 TGGGATCAGTTTTGTTCCTGGGTCACATCAACCAACAATCGTCTTTACGTCGGTTGGTTC 174518 ||||| | || || || ||| |||| || | || ||| | ||| ||||||||||| Sbjct 68454 TGGGAGCGCTTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTC 68513 Query 174519 GGTGTTCTAATGATTCCTACATTGTTAGCCGCAACTGTATGTTTCATTATCGCTTTCGTG 174578 |||||| ||||||| |||||||| ||| | || || || ||||| ||||||||| | Sbjct 68514 GGTGTTTTAATGATCCCTACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCATC 68573 Query 174579 GGTGCTCCCCCAGTGGACATCGACGGAATCCGTGAACCAGTAGCTGGTTCACTCATGTAT 174638 | || || ||||| || ||||| || |||||||||||||| ||||| ||||| | || Sbjct 68574 GCAGCACCTCCAGTAGATATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATAC 68633 Query 174639 GGAAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTACACTTC 174698 ||||||||||| ||| | ||||| ||| |||| ||||| ||||| || ||| | |||||| Sbjct 68634 GGAAACAACATTATCACAGGTGCGGTTATTCCAAGTTCTAACGCTATTGGTATTCACTTC 68693 Query 174699 TACCCAATCTGGGAAGCAGCCACACTCGACGAATGGCTCTACAACGGTGGTCCTTTCCAA 174758 |||||| | |||||||| || | | ||||||||||| |||||||||||||||| |||| Sbjct 68694 TACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGGCTTTACAACGGTGGTCCTTACCAA 68753 Query 174759 CTAGTTGTCTTCCACTTCCTTATT-GGTATCTACGCCTATATGGGACGTGAGTGGGAACT 174817 || || || || ||||| |||||| ||| | ||| ||||||||||| |||||||| Sbjct 68754 CTTGTAGTATTACACTT-CTTATTAGGTGTAGCTTGCTACATGGGACGTGAATGGGAACT 68812 Query 174818 CTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGTAGCATACTCTGCACCAGTTGCAGC 174877 || |||||||| ||| | |||||||| | ||||| | ||| || ||||| || || Sbjct 68813 TAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGC 68872 Query 174878 AGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCATTCTCAGACGCGATGCC 174937 ||| ||||||||| || | || || |||| |||||| ||||| || | ||||| Sbjct 68873 AGCAAGTGCAGTATTCTTAATTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATGCC 68932 Query 174938 CTTGGGTATCTCTGGAACATTCAACTACATGTTGGTCTTCCAAGCAGAACATAACATCTT 174997 || ||||||||||| || ||||||| |||||| || |||||||||||||| ||||| | Sbjct 68933 TTTAGGTATCTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCT 68992 Query 174998 GATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTCTTCGGTGGTTCATTGTTCTCAGC 175057 |||||||| ||||| ||| || || || ||||| || ||||| || || ||| || Sbjct 68993 TATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGTGC 69052 Query 175058 GATGCATGGTTCACTTGTTACCTCTTCACTTGTCCGTGAGACAACTGAA-ACTGAGTCAC 175116 ||||| ||||| ||||| || ||| | ||||||| ||||||| || | || | Sbjct 69053 AATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGTGA---AACTGAAGACGGTGTATC 69109 Query 175117 AG--AACTATGGTTACAAGTTCGGCCAAGAAGAAGAGACCTATAACATCGTGGCAGCCCA 175174 | ||||| |||||||| || || ||||||||||| || || |||||||| || || || Sbjct 69110 TGCTAACTACGGTTACAAATTTGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACA 69169 Query 175175 TGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCACGCTCACTCCA 175234 || ||||| || ||||| |||||||||||||| |||||||||||||| | | || Sbjct 69170 CGGTTACTTTGGACGTTTAATCTTCCAATACGCAAGTTTCAACAACTCACGTGCTTTACA 69229 Query 175235 CTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTTCACCGCACTTGGTGTTTCCAC 175294 |||||||||||| || ||||||||||| ||||||||||| || || ||||| || ||| Sbjct 69230 CTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGAATTAGCAC 69289 Query 175295 AATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTCTGTTATCGACGGACAAGGTAG 175354 ||||||||||||| | || || |||||||||||||| || ||| | || | |||||| | Sbjct 69290 AATGGCATTCAACTTAAACGGATTCAACTTCAACCAATCAGTTGTTGATAGCCAAGGTCG 69349 Query 175355 AGTATTGAACACCTGGGCGGATGTTCTTAACAGAGCTGGTCTTGGGATGGAAGTAATGCA 175414 || | ||||| ||||| || || | ||| | |||| | | || |||||||||||||| Sbjct 69350 TGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATGCA 69409 Query 175415 TGAGAGAAATGCACACAACTTCCCACTAGATTTGGC 175450 || | || || ||||||||||| |||||||| || Sbjct 69410 CGAACGTAACGCGCACAACTTCCCTCTAGATTTAGC 69445 Score = 459 bits (508), Expect = 4e-124 Identities = 700/988 (71%), Gaps = 12/988 (1%) Strand=Plus/Plus Query 175879 GAGATAGGTTTATCTTTATTGGCTGGTCTGGATTACTACTTCTTCCCACTGCTTATCTTG 175938 ||||| | || | |||||||| ||||| || | || | |||| || || | ||||| Sbjct 37934 GAGATCGTTTCGTATTTATTGGTTGGTCAGGTCTTTTATTATTTCCAACAGCATTTCTTG 37993 Query 175939 CCATTGGCGGCTGGCTTACTGGCACAACTTTTGTCACGAGTTGGTACACCCATGGTCTTG 175998 | |||| || ||| | || || || |||||||| || ||||||||| ||||| | | Sbjct 37994 CAGTTGGTGGATGGTTAACAGGTACTACTTTTGTTACATCTTGGTACACACATGGATTAG 38053 Query 175999 CTTCTTCCTATCTTGAGGG-TGCTAACTTTCTCACAGCGGCTGTCTCGACTCCTGCTGAT 176057 ||||||| || | ||||| ||| ||||| | || | ||||| || || ||||| || Sbjct 38054 CTTCTTCTTACTTAGAGGGATGC-AACTTCTTAACTGTAGCTGTATCAACACCTGCAAAT 38112 Query 176058 GCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAATCTCAGGGCGACTTCCAGCGG 176117 |||||||||||| | | || | ||||| || || | || || || || || Sbjct 38113 AGTATGGGTCATTCATTGATCTTATTATGGGGACCAGAGGCACAAGGAGATTTTACTCGT 38172 Query 176118 TGGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTGCTCTCCACGGTGCCTTCGCTCTGATT 176177 ||||| ||| | || || | ||| | ||||| || | || || || || | | ||| Sbjct 38173 TGGCTTCAAATAGGTGGATTATGGACTTTTGTCGCATTACATGGGGCATTTGGATTAATT 38232 Query 176178 GGATTCATGCTT-CGTCAGTTTGAACTGGCAAGACTCATTGGTATCCGTCCCTACAACGC 176236 |||||| || || || || |||||| | || | || | ||||| ||||| || || || Sbjct 38233 GGATTC-TGTTTACGACAATTTGAAATTGCTCGTCTTGTAGGTATTCGTCCGTATAATGC 38291 Query 176237 TATTGCATTCAGTGGTCCTATCGCTGTATTTGTCAGTGTGTTTCTTCTATACCCACTAGG 176296 |||||||| || |||||||| ||||| || ||| || | | || || |||| Sbjct 38292 AATTGCATTTTCAGGACCTATCGCAGTATTCGTTTCTGTATTCTTAATCTATCCTTTAGG 38351 Query 176297 TCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGTGGCAGCAATCTTTAGATTCCTATT 176356 ||| | ||||||||||| || ||||| || ||||| || || |||||||||| Sbjct 38352 ACAAGCAAGTTGGTTCTTTGCTCCTAGTTTTGGAGTTGCAGCTATTTTCCGATTCCTATT 38411 Query 176357 GTTTCTTCAGGGTTTCCACAACTGGACACTGAACCCCTTCCATATGATGGGAGTTGCTGG 176416 || | || |||||||| ||||||||||| || || ||||| |||||||| || || || Sbjct 38412 ATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCACATGATGGGTGTAGCAGG 38471 Query 176417 TATACTAGGTGGAGCACTACTATCTGCAATCCATGGCGTTACTGTTGAAAATACCCTATA 176476 || ||||||| |||||| |||||||||| ||||| | |||||| ||||| || ||| Sbjct 38472 AATTTTAGGTGGTGCACTATTATCTGCAATTCATGGAGCTACTGTAGAAAACACATTATT 38531 Query 176477 TGAAGATGGAGAACAGAACAACACCTTCACTGCGTTCGATTCCACGCAGGAGGAAGAGAC 176536 |||||||| || || || ||| ||| ||| | || || ||||| || Sbjct 38532 CGAAGATGGTGATGCTGCGAATACATTCCGTGCTTTCACACCAACACAATCAGAAGAAAC 38591 Query 176537 CTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCAAATCTTCGGGGTTGCGTTTAGTAA 176596 ||||| ||||| || |||||| | |||||||| ||||| || || ||||| ||| ||| Sbjct 38592 TTATTCAATGGTAACAGCGAACAGATTCTGGTCTCAAATTTTTGGTGTTGCTTTTTCTAA 38651 Query 176597 TAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCCCTGTCATGGGTCTTTGGGTCTCAAG 176656 || ||||||||||| ||||| ||||| ||||| || || | ||| | ||| |||| Sbjct 38652 CAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCAGTAACAGGTTTATGG---ACAAG 38708 Query 176657 ---TATTGGCATCATTGGGCTTGCTCTTAATCTT-CGTGCTTATGATTTTGTGAGCCAAG 176712 | |||| || | | || || |||| ||| | || ||||| ||||| |||| Sbjct 38709 TTCTTTTGGTAT-AGTAGGTTTAGCATTAAACTTAAGAGCATATGACTTTGTATCTCAAG 38767 Query 176713 AGATTAGAGCAGCAGAAGATCCTGAGTTTGAAACTTTCTACACAAAGAACATCCTTCTTA 176772 || || | ||||| |||||||| || |||||||||||||| || || || ||| | | | Sbjct 38768 AGCTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTATACTAAAAATATCTTATTAA 38827 Query 176773 ACGAAGGACTAAGAGCATGGATGGCACCTGTGGATCAACCACATGAGTCATTTGTATTCC 176832 ||||||| | ||| |||||||||| | ||| ||||||||||| |||||||||| Sbjct 38828 ACGAAGGTATTAGATCATGGATGGCCGCACAGGACCAACCACATGAAAATTTTGTATTCC 38887 Query 176833 CAGAAGAAGTTCTACCTAGAGGTAACGC 176860 |||| || ||| |||| | || ||||| Sbjct 38888 CAGAGGAGGTTTTACCACGTGGAAACGC 38915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729923359101920