Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq684 704 0.0 >seq684 Length=114989 Score = 704 bits (780), Expect = 0.0 Identities = 733/955 (77%), Gaps = 10/955 (1%) Strand=Plus/Plus Query 158406 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACC 158465 ||||| | || ||||||||||||| || | ||||| || || | || |||| || Sbjct 68490 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCTACATTATTAACAGCTACA 68549 Query 158466 ATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAA 158525 | ||| |||||| |||| ||| |||| || || || || || ||||| || ||||||||| Sbjct 68550 AGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAA 68609 Query 158526 CCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCT 158585 || || ||||| ||||| | || || |||||||| ||| | ||||| ||| | ||| | Sbjct 68610 CCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCGGTTATTCCAAGT 68669 Query 158586 TCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGG 158645 || ||||| |||||| |||||||||| || | |||||||| || || | || || ||| Sbjct 68670 TCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGG 68729 Query 158646 CTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCAT--CTATG 158703 || || ||||||||||||| |||||| ||||| || |||||| | | || | || || Sbjct 68730 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCT-TG 68788 Query 158704 CATATATGGGACGTGAATGGGAACTTTCATACCGCTTAGGTATGCGCCCCTGGATCTGTG 158763 | || ||||||||||||||||||||| ||||| ||||| ||||| || ||||| | | Sbjct 68789 C-TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCG 68847 Query 158764 TAGCATATTCTGCACCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTC 158823 |||| | || || ||||| ||||||||| ||| |||||| | | || || |||| | Sbjct 68848 TAGCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCAGTATTCTTAATTTACCCAATCGGAC 68907 Query 158824 AAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTG 158883 ||||| ||||| |||| ||||||| | ||||||||||||||||| |||| |||| | | Sbjct 68908 AAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCATGTTAG 68967 Query 158884 TATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGG 158943 |||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||| | Sbjct 68968 TATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTG 69027 Query 158944 TATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTC 159003 | || ||||||||| | ||| ||| ||||| || ||| || || || | | | Sbjct 69028 TGTTTGGTGGATCTTTATTCAGTGCAATGCACGGTTCTCTTGTAACATCTAGTTTAATCC 69087 Query 159004 GTGAAACGACTGAA-ACAGAGTCACAG--AACTATGGTTACAAGTTCGGACAAGAAGAAG 159060 ||||||| |||| || | || | | ||||| |||||||| || ||||||||||||| Sbjct 69088 GTGAAAC---TGAAGACGGTGTATCTGCTAACTACGGTTACAAATTTGGACAAGAAGAAG 69144 Query 159061 AAACATATAATATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTT 159120 |||| || || ||||| || || || |||||||| || ||||| |||||||||||||| Sbjct 69145 AAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCAA 69204 Query 159121 CATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCT 159180 ||||||||||| ||| | || ||||||||| | ||||| ||||| ||||| || |||| Sbjct 69205 GTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCT 69264 Query 159181 GGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAACGGTTTCAACTTCAACC 159240 |||| || || ||||| | || |||||||||||| | ||||| ||||||||||||| Sbjct 69265 GGTTAACTGCTCTTGGAATTAGCACAATGGCATTCAACTTAAACGGATTCAACTTCAACC 69324 Query 159241 AGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGTG 159300 | || | ||||| | || ||||||||| | ||||| ||||| || | | ||||||| Sbjct 69325 AATCAGTTGTTGATAGCCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCAACCGTG 69384 Query 159301 CAGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGA 159355 | | | | ||||||||||| ||||| || |||||||| ||||||||||| || || Sbjct 69385 CTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGA 69439 Score = 488 bits (540), Expect = 6e-133 Identities = 724/1021 (71%), Gaps = 4/1021 (0%) Strand=Plus/Plus Query 159899 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 159958 |||||| || |||| |||||| | ||||| ||||||||||| ||| |||| ||||| || Sbjct 37906 TTTGACTTAGTCGATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGT 37965 Query 159959 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGAACAACTTTC 160018 ||| | | |||| || || | |||||| |||| || ||| | || || || ||||| Sbjct 37966 CTTTTATTATTTCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTT 38025 Query 160019 GCAACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTGAGGG-TGCAAACTTTCT 160077 | || ||||| || |||||| | ||| ||| || | ||||| ||||| ||| | Sbjct 38026 GTTACATCTTGGTACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGCAA-CTTCTT 38084 Query 160078 TACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGG 160136 || | | || || || || | |||||||||||| || |||| | |||| Sbjct 38085 AACTGTAGCTGTATCAACACCTGCAAATAGTATGGGTCATTC-ATTGATCTTATTATGGG 38143 Query 160137 GTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTTG 160196 | || ||||| ||||| ||||| | ||| | ||| | || ||| | |||| ||||| Sbjct 38144 GACCAGAGGCACAAGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTTG 38203 Query 160197 TGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCAC 160256 | ||| | ||||| || || | ||||||||||| | || || |||||| | || | Sbjct 38204 TCGCATTACATGGGGCATTTGGATTAATTGGATTCTGTTTACGACAATTTGAAATTGCTC 38263 Query 160257 GTCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTCTTTG 160316 |||| | ||||| ||||| || ||||| ||||| || || || ||||| || || || | Sbjct 38264 GTCTTGTAGGTATTCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATTCG 38323 Query 160317 TCAGCGTATTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTG 160376 | |||||| | ||||| || || || || | |||||||| || ||||| |||| Sbjct 38324 TTTCTGTATTCTTAATCTATCCTTTAGGACAAGCAAGTTGGTTCTTTGCTCCTAGTTTTG 38383 Query 160377 GGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGCTTA 160436 | || ||||| || || ||||||| || ||| | ||||| || || |||||||| |||| Sbjct 38384 GAGTTGCAGCTATTTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGGACACTTA 38443 Query 160437 ACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCCATCC 160496 | || ||||| |||||||| || || || || |||| || ||||| | ||| || | Sbjct 38444 ATCCATTCCACATGATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCTGCAATTC 38503 Query 160497 ATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGG 160556 |||| | ||||||||| |||||| | | |||||||| || || ||||| || | Sbjct 38504 ATGGAGCTACTGTAGAAAACACATTATTCGAAGATGGTGATGCTGCGAATACATTCCGTG 38563 Query 160557 CGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGT 160616 | || | ||||| |||||| |||||||| ||||| || || ||| | ||||||| Sbjct 38564 CTTTCACACCAACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAACAGATTCTGGT 38623 Query 160617 CGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTG 160676 | || || || ||| |||| ||||||||||| || ||||||||||| |||||||| |||| Sbjct 38624 CTCAAATTTTTGGTGTTGCTTTTTCTAACAAACGTTGGCTTCATTTCTTCATGTTATTTG 38683 Query 160677 TGCCTGTTATGGGTCTTTGGACATCCAGTATTGGCATTATTGGTCTTGCTCTCAATCTTC 160736 | || || | ||| | |||||| | |||| || | ||| | || | || | Sbjct 38684 TTCCAGTAACAGGTTTATGGACAAGTTCTTTTGGTATAGTAGGTTTAGCATTAAACTTAA 38743 Query 160737 GTGCTTACGATTTCGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCAGAATTTGAGACCT 160796 | || || || || || ||||||| || | ||||| ||||||||||||||||| || | Sbjct 38744 GAGCATATGACTTTGTATCTCAAGAGCTTCGTGCAGCTGAAGATCCAGAATTTGAAACTT 38803 Query 160797 TCTACACCAAGAACATCCTACTGAATGAAGGACTACGTGCATGGTTAGCACCTGCCGACC 160856 |||| || || || ||| || | || ||||| | | ||||| | || | |||| Sbjct 38804 TCTATACTAAAAATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAGGACC 38863 Query 160857 AACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAAT 160916 |||| ||||| || ||| | |||||||| || ||| | || | || ||||||||||||| Sbjct 38864 AACCACATGAAAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAAT 38923 Query 160917 A 160917 | Sbjct 38924 A 38924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552468876350720