Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq684 751 0.0 >seq684 Length=114989 Score = 751 bits (832), Expect = 0.0 Identities = 764/990 (77%), Gaps = 8/990 (1%) Strand=Plus/Plus Query 178852 TGGGAACAGTTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTC 178911 ||||| | |||||| ||| | || ||| | || ||||| || | ||||||||| Sbjct 68454 TGGGAGCGCTTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTC 68513 Query 178912 GGTGTGCTGATGATTCCTACGTTGCTTGCTGCAACTATCTGTTTCATCGTTGCTTTCGTA 178971 ||||| | ||||| ||||| || | | || || | ||| |||||| | |||||| | Sbjct 68514 GGTGTTTTAATGATCCCTACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCATC 68573 Query 178972 GCAGCACCTCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTAT 179031 ||||||||||| || ||||| || || ||||||||||| || ||||| ||||| | || Sbjct 68574 GCAGCACCTCCAGTAGATATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATAC 68633 Query 179032 GGAAACAACATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTTC 179091 ||||||||||| ||| | ||||| ||| | |||||||| ||||| |||||| | |||||| Sbjct 68634 GGAAACAACATTATCACAGGTGCGGTTATTCCAAGTTCTAACGCTATTGGTATTCACTTC 68693 Query 179092 TACCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCAA 179151 ||||| | |||||||| || || | || || ||||| || ||||||||||||| |||| Sbjct 68694 TACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGGCTTTACAACGGTGGTCCTTACCAA 68753 Query 179152 CTGGTAGTCTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTT 179211 || ||||| || |||||| | | || | | ||| ||||||||||| ||||||||| Sbjct 68754 CTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGCTACATGGGACGTGAATGGGAACTT 68813 Query 179212 TCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCT 179271 |||||| |||| |||||||| ||||| | || || | ||| || ||||| ||||| Sbjct 68814 AGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCA 68873 Query 179272 GCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCTATGCCT 179331 || |||||||||||| | | || || |||| |||||| |||||||||| ||||||| Sbjct 68874 GCAAGTGCAGTATTCTTAATTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATGCCT 68933 Query 179332 CTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTT 179391 | ||||||||||||||||| |||| |||| | ||||||||||||||||||||||| ||| Sbjct 68934 TTAGGTATCTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTT 68993 Query 179392 ATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCT 179451 |||||||| ||||||||| ||||||||||| || || ||||||||| | ||| ||| Sbjct 68994 ATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGTGCA 69053 Query 179452 ATGCACGGAAGTCTCGTTACTTCCTCGCTT-GTTCGTGAAACAACTG-AGACAGAGTCAC 179509 |||||||| ||| || || | || | || | ||||| ||||| |||| | || | Sbjct 69054 ATGCACGGTTCTCTTGTAACAT-CTAGTTTAATCCGTGA---AACTGAAGACGGTGTATC 69109 Query 179510 AG--AACTATGGTTATAAGTTCGGACAAGAAGAAGAGACCTATAACATCGTCGCAGCACA 179567 | ||||| ||||| || || |||||||||||||| || || |||||||| || ||||| Sbjct 69110 TGCTAACTACGGTTACAAATTTGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACA 69169 Query 179568 TGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTTTGCA 179627 || ||||| || ||||| ||||||||||| ||| || ||||||||||| |||| || Sbjct 69170 CGGTTACTTTGGACGTTTAATCTTCCAATACGCAAGTTTCAACAACTCACGTGCTTTACA 69229 Query 179628 CTTCTTCCTTGCTGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGGCGTGTCAAC 179687 ||||||| | ||||| ||||| ||||| || |||||||| ||||||||||| | || Sbjct 69230 CTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGAATTAGCAC 69289 Query 179688 CATGGCGTTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGACG 179747 ||||| |||||| | ||||| |||||||||||||| || | |||| | ||||| || Sbjct 69290 AATGGCATTCAACTTAAACGGATTCAACTTCAACCAATCAGTTGTTGATAGCCAAGGTCG 69349 Query 179748 TGTCCTTAACACATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCA 179807 ||| | ||||| ||||| ||| | | |||||||| | ||| ||||||||||| ||||| Sbjct 69350 TGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATGCA 69409 Query 179808 TGAGCGTAACGCACACAACTTCCCACTCGA 179837 || |||||||| ||||||||||| || || Sbjct 69410 CGAACGTAACGCGCACAACTTCCCTCTAGA 69439 Score = 479 bits (530), Expect = 3e-130 Identities = 707/999 (71%), Gaps = 2/999 (0%) Strand=Plus/Plus Query 180033 GACGACTGGCTTAAACGCGACCGCTTTGTATTTGTGGGCTGGTCTGGACTACTACTTCTT 180092 || |||||| | ||||| || || || |||||| | || ||||| || || || | || Sbjct 37918 GATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGTCTTTTATTATTT 37977 Query 180093 CCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGG 180152 || || || | |||||| |||| || ||| | || || || ||||||| || |||| Sbjct 37978 CCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTTGTTACATCTTGG 38037 Query 180153 TACACCCACGGTCTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTTACGGCAGCTGT 180211 ||||| || || | |||||||| || | || || ||| ||||| | || | |||||| Sbjct 38038 TACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGC-AACTTCTTAACTGTAGCTGT 38096 Query 180212 CTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 180271 || || ||||| | |||||||||||| | | || | ||||| || ||| | || Sbjct 38097 ATCAACACCTGCAAATAGTATGGGTCATTCATTGATCTTATTATGGGGACCAGAGGCACA 38156 Query 180272 GGGGAATTTCCAACGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGG 180331 || |||| || ||| ||| | || ||| | |||| ||| || || | || || Sbjct 38157 AGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTTGTCGCATTACATGG 38216 Query 180332 TGCCTTCGCCCTAATTGGATTTATGCTACGCCAGTTTGAACTGGCACGTCTTATTGGTAT 180391 || || | |||||||||| |||| || |||||| | || |||||| | ||||| Sbjct 38217 GGCATTTGGATTAATTGGATTCTGTTTACGACAATTTGAAATTGCTCGTCTTGTAGGTAT 38276 Query 180392 CCGTCCTTACAATGCTATTGCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTTCT 180451 ||||| || ||||| |||||||| || || |||||||| ||||| || ||||| | Sbjct 38277 TCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATTCGTTTCTGTATTCTT 38336 Query 180452 CATCTACCCACTGGGTCAGTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAAT 180511 ||||| || | || || | ||||||||||||||||| |||||| || ||||| || Sbjct 38337 AATCTATCCTTTAGGACAAGCAAGTTGGTTCTTTGCTCCTAGTTTTGGAGTTGCAGCTAT 38396 Query 180512 CTTTAGATTCCTACTCTTTCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATAT 180571 || |||||||| | || | || |||||||| |||||||| || || || ||||| || Sbjct 38397 TTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCACAT 38456 Query 180572 GATGGGAGTTGCTGGTATACTAGGTGGAGCATTGCTATCAGCAATCCATGGCGTAACTGT 180631 |||||| || || || || ||||||| ||| | |||| ||||| ||||| | ||||| Sbjct 38457 GATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCTGCAATTCATGGAGCTACTGT 38516 Query 180632 GGAGAACACACTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGGCATTTGATTCAAC 180691 || |||||| | | |||||||| || || || || || || || |||| Sbjct 38517 AGAAAACACATTATTCGAAGATGGTGATGCTGCGAATACATTCCGTGCTTTCACACCAAC 38576 Query 180692 GCAAGAGGAGGAAACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGG 180751 ||| || |||||||| || ||||| || || ||| | |||||||| || || || || Sbjct 38577 ACAATCAGAAGAAACTTATTCAATGGTAACAGCGAACAGATTCTGGTCTCAAATTTTTGG 38636 Query 180752 TATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGG 180811 | |||| ||||||||||| || ||||||||||| |||||||| ||||| || || | || Sbjct 38637 TGTTGCTTTTTCTAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCAGTAACAGG 38696 Query 180812 TCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTT 180871 | |||||||| ||| |||| || | ||| | || | ||| | | || || || || Sbjct 38697 TTTATGGACAAGTTCTTTTGGTATAGTAGGTTTAGCATTAAACTTAAGAGCATATGACTT 38756 Query 180872 CGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACCAAGAA 180931 || ||||||| | | ||||| |||||||| || || || || ||||| || || || Sbjct 38757 TGTATCTCAAGAGCTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTATACTAAAAA 38816 Query 180932 CATCCTATTGAATGAAGGACTACGTGCATGGTTGGCACCTGCCGATCAACCACACGAAAA 180991 ||| |||| || ||||| | | ||||| |||| | || |||||||| ||||| Sbjct 38817 TATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAGGACCAACCACATGAAAA 38876 Query 180992 CTTCATCTTCCCTGAAGAAGTTCTACCAAGAGGTAACGC 181030 || | ||||| || || ||| ||||| | || ||||| Sbjct 38877 TTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGC 38915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610324381681920