Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_027339.1 Length=38389 Score E Sequences producing significant alignments: (Bits) Value seq502 102 2e-17 >seq502 Length=611 Score = 102 bits (112), Expect = 2e-17 Identities = 160/228 (70%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 8989 CGTCACAAGCTTGCCAGCGACGGTACCCGCTTTGGTC-CCGGTCAGGCGATTGTCACCCC 9047 || ||||||||||| | |||||| ||||| ||| | | |||| |||||||| ||||| || Sbjct 24 CGCCACAAGCTTGCGAACGACGGCACCCGTTTTTGCCGCCGGGCAGGCGATCGTCACGCC 83 Query 9048 GGCGGTGATCAAAGGGGAACTGCTGGCAACCTACCGTCAGCTTGAGCGTGCGGGGATCGT 9107 | ||||| | || | || ||| | || || |||| ||| | ||| | || Sbjct 84 GTCGGTGCTGAAGGCCGAGCTGGTCGCGCTGATGCGCGAGCTCGAGGAGGGTGGGCTGGT 143 Query 9108 GGAAAACTACGAACTTTTTAAGCAGTACCTGGTTGTGGAGCGTGATGCCAGCGATCCGAA 9167 || ||| ||| | || ||| ||||| | || ||||| ||||||| ||| |||| Sbjct 144 CGAGAACCTCGACCAGTTCAAGGCCGACCTGATCGTCGAGCGCGATGCCACCGACCCGAC 203 Query 9168 CCGCCTGAACACGCTGTTCCCGCCTGACTATGTTAACCAGTTGCGTGT 9215 |||| | ||| |||| ||||||| ||| || |||||| |||| || Sbjct 204 CCGCGTCAACGCGCTCGTCCCGCCCGACCTGGTGAACCAGCTGCGCGT 251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122722203180808