Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq6 154 2e-32 seq29 113 6e-20 seq1 105 8e-18 seq4 84.2 3e-11 >seq6 Length=1241202 Score = 154 bits (170), Expect = 2e-32 Identities = 582/902 (65%), Gaps = 21/902 (2%) Strand=Plus/Minus Query 111278 GTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 111337 |||||||| | || || || || | ||||| || || || ||||| |||| ||| Sbjct 394350 GTGTACTCGATGATCTCCGTGCACAGATTGGATGATTTGATGGTGCCCAAGTTCTGCTGG 394291 Query 111338 TTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 111397 || ||| |||||| || |||||| | |||||||| ||||| || |||||| ||| Sbjct 394290 TTTGATTTCAGGTTGCAGGCGTCCTTGAACAGCATGTAAGGCGTGCCTGTCTCCACCTGG 394231 Query 111398 GATTTGAGAATAGCCTTCCAAACATCGGCGGCTGGTAC--AATGGCGTTGGC--CCGTCC 111453 || | ||||| || ||| | || ||||| | ||| | ||| | ||| Sbjct 394230 GAGTCCAGAATCGCGAACCAGA-----GCTGCTGGGCCTTAATAACCTTGCGTGCTTTCC 394176 Query 111454 CTC-CGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGAC 111512 | | | |||||| | | |||||| | ||||||||| || | |||| | || | Sbjct 394175 CACTCTTCTCGTAGCTGGCGTAGAGCTGGTTAAACTCCTCGCCGCACACGTCCGCCAGGC 394116 Query 111513 CTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGA 111572 | || || || || || ||||| ||||| | || | ||| || ||| ||||| Sbjct 394115 CCGGGCACTCGTTGGGGCAAAAAAGGGACCAGTCCCCGTCGCTCTCCACGCGCCGCATGA 394056 Query 111573 AAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCT 111631 | ||||| || |||| |||| | || ||||| | | ||| | || |||| || Sbjct 394055 ACAGGTCGGGCGTCCAGAGGGCGTAGAACAGATCACGTGCAC-GCTCCAACTCGTTGCCG 393997 Query 111632 TGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACT 111691 ||||| || | || ||||| || | ||| || || ||||| ||||| || |||| Sbjct 393996 TGGTTCTTACGCAGGTCCAGGAATTCAAAGATGTCTGCATGCCAGGGCTCTAGGTAGATG 393937 Query 111692 GCGATAGATCCCTTTCGAC-GCC--CAGCTTGATTTACATAGCGCGCTGTGGCGTTAAAT 111748 |||| || ||||| || ||| | | || | || ||||| || || |||| || Sbjct 393936 GCGAAGGAACCCTTGCGCTTGCCTCCGCCCTGGTCGACGTAGCGGGCCGTATCGTTGAAA 393877 Query 111749 ACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAAT--ACGAGATT 111806 ||||| ||||| || | || || | || || || | || ||||| | ||| Sbjct 393876 ACGCGGAGCATAGGTACGATGCCGTTGGAGGTGCCGTTCGATCCACGAATGTAGGAG--- 393820 Query 111807 TATTG-GCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGC 111865 | | | || | | | |||||| | ||||| || || || | || || || Sbjct 393819 TCTCGCGCCCGAATGTTGTGGATGGATACGCCAATCCCACCCGCAAATTTGGAAATGGCA 393760 Query 111866 GCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGG 111925 || || | | | || || | ||||| |||| ||| ||||||||||| ||| | ||| Sbjct 393759 GCGCATTGCTTGAGGGTGTCGTAGATGCCGTCGATGGAGTCCTCCTTCATGGTCAGGAGG 393700 Query 111926 AAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGA 111985 ||||| ||| | || || | ||||| || |||||||| || || || || || || Sbjct 393699 AAGCAGGAGGAGAGTTGGGGCCGCGGTGTGCCGGCATTGAAAAGTGTAGGCGTAGCATGC 393640 Query 111986 ATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCG 112045 |||| | | ||||| | ||| ||||||| | | ||||||| || | Sbjct 393639 GTGAAAAGTTTGAGCGACATGAGATTGTAGGTCTCCAGCGCCGCGTCAATGTTCTCTTTG 393580 Query 112046 TGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCG 112105 ||||| || ||||| || ||||||| ||||| ||| ||| ||||| | | || | Sbjct 393579 TGGATACCAATTGCCACACGCATGATCATGTGCTGGGGGCGCTCCATAACTACCCCGTTC 393520 Query 112106 AGCCGTTGAAGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCC 112165 | | |||| || ||| || || ||||| | |||||||| || ||||| ||||| Sbjct 393519 ATCTTAAGAAGGTACGACTTTTCCAGCGTTTTAAAGCCAAAGTAGTCATAATCAAAGTCC 393460 Query 112166 CG 112167 || Sbjct 393459 CG 393458 >seq29 Length=316797 Score = 113 bits (124), Expect = 6e-20 Identities = 251/377 (67%), Gaps = 0/377 (0%) Strand=Plus/Plus Query 111313 CTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCAT 111372 ||| || || ||||| |||| |||||| |||||| |||||| || |||||||| ||||| Sbjct 130848 CTTGATGGTGCCCAAGTTCTGTTGGTTGCTCTTCAGGTTGCAAGCGTCCTTGTACAGCAT 130907 Query 111373 GTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACATCGGCGGCTGG 111432 ||||||||| |||||||| |||| || | | || || ||| | || || | Sbjct 130908 GTAGGGCGTGCCCGTCTCAATCTGCGAGTCCAAGATGGCAAACCACAAGTCCTGAGCACG 130967 Query 111433 TACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTC 111492 || | ||| | || ||||| ||||| ||| || ||| | || ||| Sbjct 130968 CACTGTCTTCTTGACTCGGCCCTCTCGTTCGTATTTTAAATATAGGTCCCGGAAGGCCTG 131027 Query 111493 ACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACC 111552 || ||| | |||||| || || || ||||| | || ||||| ||| | Sbjct 131028 GCCGTGGCAGTCCGCGAGACCGGGGCACTGATCGGGACACATGAGGGACCAGGTCCCATC 131087 Query 111553 TTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACA 111612 ||||| |||| || |||||| ||||| |||||||| || | |||||||| | Sbjct 131088 CTCCTCCACCCTCTCCATGAAGAGGTCGGGAATCCATAGTCCATAGAAGAGATCCCGCGC 131147 Query 111613 CCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTG 111672 ||| ||||| || | || ||||| || | || || | || | ||| |||||||| Sbjct 131148 CCGCGCCTCCTCCTTTCCGTGGTTCTTCCGCAGGTCCAGCACTTCAAAGATGTCCGCGTG 131207 Query 111673 CCATGGCTCAAGATAGA 111689 ||| ||||| || |||| Sbjct 131208 CCACGGCTCCAGGTAGA 131224 >seq1 Length=1546440 Score = 105 bits (116), Expect = 8e-18 Identities = 300/456 (66%), Gaps = 14/456 (3%) Strand=Plus/Plus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 ||||| || || |||||||| || | ||| | || | || || | ||||| ||||| Sbjct 801078 CGATCGAAGCGGCCCGGGCGGAGCAAGGCCTGGTCCAAGACGTCTGCACGATTGGTGGCG 801137 Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569 || || || | || |||| | || ||||| ||||||||||| || | || || Sbjct 801138 GCGATGACGATGATCCCAGGGTTGCCCTCGAAGCCGTCCATCTCGGTCAGCAGCTGGTTC 801197 Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCT--GGCATACCACCAGCACTGCGTTGCTTGCCCA 11627 | || || || | ||| || || || |||| | | | || | ||| || ||||| Sbjct 801198 AGGGTCTGCTCCCGCTCGTCGTTCCCTCCGGCAAAGCCC--GCCCCGCGCTGACGGCCCA 801255 Query 11628 CCGCATCAATCTCATCAATGAAGACAATACATGG----TTGATTTTCGCGGGCGATTTCA 11683 | ||||||||||| || || || | || ||||| || | ||||| | ||| Sbjct 801256 CGGCATCAATCTCGTCGATAAAAATGATGCATGGCGCGTTCTTCTTCGCCTG----TTCG 801311 Query 11684 AAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCA 11743 || | |||||| || | ||||||||| || ||||||||||| ||||| | | | | Sbjct 801312 AACATATCGCGCACACGCGAGGCACCCACCCCCACAAACATCTCAACAAACTCCGAGCCG 801371 Query 11744 GAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTT 11803 | | | |||||| || || || || ||||||| |||| || || || ||||| Sbjct 801372 GCGGCCGAGATGAAGGGCACGCCCGACTCCCCCGCGACGGCTTTAGCCAGCAGTGTCTTA 801431 Query 11804 CCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC-ACTTCCAAA 11862 ||||| || || || | | | | || || |||||||| || || || ||| Sbjct 801432 CCCGTCCCGGGGGGTCCGTCCAAGATCACCCCGCGAGGGATCTTTGCGCCTACGTCC-GT 801490 Query 11863 ATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTC 11898 ||| | ||||| | |||||| || || || | ||| Sbjct 801491 GTATTTTTCGGGGTTCTTGAGGAAGTCAACTACCTC 801526 >seq4 Length=1364975 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| || ||||||||||||||||| |||| | |||||| || |||||||| ||||| Sbjct 237844 GGCATCAGGCCCCGCTTCTTCAACCAGAAAATCGAGCAGAAGGAGCCGGAGAAAAAGATG 237785 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGA 122819 |||||||| ||||| || | | ||| ||||| || || Sbjct 237784 CCCTCCACGGCTGCAAAGGCGATCAAGCGCTCGGCAAAAGA 237744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628026630326400