Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq6 183 4e-41 seq29 170 2e-37 seq1 138 1e-27 seq4 104 3e-17 >seq6 Length=1241202 Score = 183 bits (202), Expect = 4e-41 Identities = 590/904 (65%), Gaps = 25/904 (3%) Strand=Plus/Minus Query 118752 GTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 118811 |||||||| || || |||||||||| || || || |||||||||||||||| || Sbjct 394350 GTGTACTCGATGATCTCCGTGCACAGATTGGATGATTTGATGGTGCCCAAGTTCTGCTGG 394291 Query 118812 TTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGG 118871 ||||| || ||| || || |||||| | |||||||| ||||| || |||||| ||| Sbjct 394290 TTTGATTTCAGGTTGCAGGCGTCCTTGAACAGCATGTAAGGCGTGCCTGTCTCCACCTGG 394231 Query 118872 GACTTGAGAATAGCCTTCCAGACATCGGCAGCTGG--CACAGTGGCGTTG---GCTCGCC 118926 || | ||||| || ||||| || ||||| | | | | ||| ||| || Sbjct 394230 GAGTCCAGAATCGCGAACCAGA-----GCTGCTGGGCCTTAATAACCTTGCGTGCTTTCC 394176 Query 118927 C-CTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACC-CACGGCCTCTGAGAG 118984 | ||||| |||||| | | |||||| | |||||| || || ||| | || | || Sbjct 394175 CACTCTT-CTCGTAGCTGGCGTAGAGCTGGTTAAACTCCTCGCCGCAC-ACGTCCGCCAG 394118 Query 118985 CCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCAT 119044 || || || | ||||| || || ||||| | || | ||| || ||| ||| Sbjct 394117 GCCCGGGCACTCGTTGGGGCAAAAAAGGGACCAGTCCCCGTCGCTCTCCACGCGCCGCAT 394058 Query 119045 GAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTC--TTCATCC 119102 ||| ||||| || ||||||| || |||| ||||| || || ||| | || | Sbjct 394057 GAACAGGTCGGGCGTCCAGAGGGCGTAGAACAGATCACG--TGCACGCTCCAACTCGTTG 394000 Query 119103 CCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTAC 119162 || || || ||||| |||| || || | ||| || || ||||| || || ||||| Sbjct 393999 CCGTGGTTCTTACGCAGGTCCAGGAATTCAAAGATGTCTGCATGCCAGGGCTCTAGGTAG 393940 Query 119163 ACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTA 119219 | |||| || ||||| || | || |||||| || || | || || |||| Sbjct 393939 ATGGCGAAGGAACCCTTGCGCTTGCCTCCGCCCTGGTCGACGTAGCGGGCCGTATCGTTG 393880 Query 119220 AATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAA--TACGAG 119277 || || || ||||| || | ||| || | ||| ||| || | || |||| || ||| Sbjct 393879 AAAACGCGGAGCATAGGTACGATGCCGTTGGAGGTGCCGTTCGATCCACGAATGTAGGAG 393820 Query 119278 ACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTT 119337 || || | | | ||||||| | ||||| || || || | || || || Sbjct 393819 TCT--CGCGCCCGAATGTTGTGGATGGATACGCCAATCCCACCCGCAAATTTGGAAATGG 393762 Query 119338 GCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGA 119397 ||||| | | |||| || ||||||| || ||||| ||||| |||| | | | || Sbjct 393761 CAGCGCATTGCTTGAGGGTGTCGTAGATGCCGTCGATGGAGTCCTCCTTCATGGTCAGGA 393702 Query 119398 GGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGT 119457 |||||||| || | ||| |||| ||||| || || ||||| || || || || || | Sbjct 393701 GGAAGCAGGAGGAGAGTTGGGGCCGCGGTGTGCCGGCATTGAAAAGTGTAGGCGTAGCAT 393642 Query 119458 GGATGAACATACCTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCC 119517 | |||| | | ||||| | ||||||||||| | ||| ||||| || Sbjct 393641 GCGTGAAAAGTTTGAGCGACATGAGATTGTAGGTCTCCAGCGCCGCGTCAATGTTCTCTT 393582 Query 119518 CGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCAT 119577 ||| ||||| || | || ||||| | ||||| ||||| ||||| | | || | Sbjct 393581 TGTGGATACCAATTGCCACACGCATGATCATGTGCTGGGGGCGCTCCATAACTACCCCGT 393522 Query 119578 CGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATAGCCAAAATCGTAGT 119637 | | | | ||||| ||| |||| || || | ||||| ||| || |||| ||| Sbjct 393521 TCATCTTAAGAAGGTACGACTTTTCCAGCGTTTTAAAGCCAAAGTAGTCATAATCAAAGT 393462 Query 119638 CCCG 119641 |||| Sbjct 393461 CCCG 393458 Score = 82.4 bits (90), Expect = 9e-11 Identities = 154/224 (69%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864 ||||||| |||| |||||||| | | || ||||||||||| || |||||||||| Sbjct 395315 TGAACTGTATGGCATCCGCCTTGGGCCGGGTCCGTAGGTAGTACATGCCGGTCTTGAGCC 395256 Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACT-TGGAGAGGGTTGGACTTTCCATG 117923 ||| |||||||| ||| | ||||| |||| | || || || | || ||| | ||| Sbjct 395255 CCTTCTTCCAGGAATAGAAGTGCATGGAGGTGAGCTGTGCAG-GCGTCGGATTGGCCAAA 395197 Query 117924 AAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATC 117983 || || | | || || ||| |||| || || || || || ||| || ||| Sbjct 395196 TGGATATTGAGAGACTGCGACTGACAGATGTAGGCGCCGCGGTCGGCGGCCTGGTCGATC 395137 Query 117984 ACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTT 118027 || |||| | ||| |||||||| ||| |||| |||| ||| Sbjct 395136 ACGCACTTCTGCCGGATCTCCCACACTGTCTTGTACAGGTCCTT 395093 >seq29 Length=316797 Score = 170 bits (188), Expect = 2e-37 Identities = 566/872 (65%), Gaps = 9/872 (1%) Strand=Plus/Plus Query 118764 ATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 118823 || || ||||||| || || ||| |||||||||||||||| ||| || ||| | Sbjct 130825 ATCTCGGTGCACAGATTCGAGGACTTGATGGTGCCCAAGTTCTGTTGGTTGCTCTTCAGG 130884 Query 118824 TTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 118883 || || || |||||||| |||||||| ||||| |||||||| | || || | | || Sbjct 130885 TTGCAAGCGTCCTTGTACAGCATGTAGGGCGTGCCCGTCTCAATCTGCGAGTCCAAGATG 130944 Query 118884 GCCTTCCAGACATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTT 118943 || ||| | || ||| |||| || ||| |||| |||||| ||||| ||| Sbjct 130945 GCAAACCACAAGTCCTGAGCACGCACTGTCTTCTTGACTCGGCCCTCTCGTTCGTATTTT 131004 Query 118944 GTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGG 119003 || ||| | || | | || | || | ||| || || || ||| || Sbjct 131005 AAATATAGGTCCCGGAAGGCCTGGCCGTGGCAGTCCGCGAGACCGGGGCACTGATCGGGA 131064 Query 119004 CAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAG 119063 || | ||| ||||| ||| ||||||| |||| || |||||||||||| || ||||| Sbjct 131065 CACATGAGGGACCAGGTCCCATCCTCCTCCACCCTCTCCATGAAGAGGTCGGGAATCCAT 131124 Query 119064 AGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCC 119123 || | ||||||||||||| || || || || | || || || |||| ||| Sbjct 131125 AGTCCATAGAAGAGATCCCGCGCCCGCGCCTCCTCCTTTCCGTGGTTCTTCCGCAGGTCC 131184 Query 119124 AAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC---CTTA 119180 | | || | ||| |||||||||||||| |||||||| | || | | ||| | | Sbjct 131185 AGCACTTCAAAGATGTCCGCGTGCCACGGCTCCAGGTAGATGGCAAAGGCCCCTGGCCTC 131244 Query 119181 CGACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATG 119240 | || |||||| || || | ||| ||| ||| || || | ||||| || | Sbjct 131245 TTGCCTCCCCCCTGGTCCACGTAGCGCGCCGTGACGTCGAAGACCCTGAGCATGGGCACC 131304 Query 119241 ATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTG-GCTCTGACATCGTG 119299 | ||| | | || || || ||| ||| || | || || | || | ||| Sbjct 131305 AGACCGTTGCTCGTCCCCTTCGTGCCCTTAATGT-AGGCGCCGTGCGCGCGGATGTTGTG 131363 Query 119300 GATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCC 119359 || | || || ||||| ||| ||| || ||||||| | | || || | Sbjct 131364 GACCGAGAGGCCGATTCCCCCCGCCGCCTTGCTTATCACGGCGCACTGCTTCAGCGTGTC 131423 Query 119360 GTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGG 119419 |||||| ||| |||||||||| | | | || | ||||||||| ||||| || || Sbjct 131424 GTAGATACCAACGATCGAGTCCGCTTGCATGGCCAGGAGGAAGCACGAGGACATCTGCGG 131483 Query 119420 CCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACA 119478 | || || |||| ||| ||||| || | |||||||||||| || | | | || Sbjct 131484 GAAACGCGTGCCCGCGTGGAAAAGAGTAGGGGAGGCGTGGATGAAC-CACTTGTTGCTCA 131542 Query 119479 TCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCC 119538 | ||||||||||||||| ||||||| | || || || || ||||| | | || | Sbjct 131543 TGAGCTCGTAGGTCTCCAAGGCGGCGGGCAGATCCTCTCCATGGATACCAAGGGCAACGC 131602 Query 119539 GCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTA-ACTC 119597 ||| || |||||| || || |||| || | | ||| | || | | ||| ||| Sbjct 131603 GCAGAAGCATGTACTGCGGGCGCTCCACCACCTTGCGCCCGATCTTCAGCAAGTAGGCTC 131662 Query 119598 TTCTCCAAGGTCTTGAGACCAAAATAGCCAAA 119629 | |||| ||| |||| || |||||| |||| Sbjct 131663 GT-TCCATGGTTTTGAAGCCGAAATAGTCAAA 131693 >seq1 Length=1546440 Score = 138 bits (152), Expect = 1e-27 Identities = 258/375 (69%), Gaps = 18/375 (5%) Strand=Plus/Plus Query 14062 ACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGC 14121 |||||| ||||| || |||||||| | ||| | ||| | || || || || || || Sbjct 801077 ACGATCGAAGCGGCCCGGGCGGAGCAAGGCCTGGTCCAAGACGTCTGCACGATTGGTGGC 801136 Query 14122 CGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATT 14181 |||||||| | ||| || | | | || ||||| |||||||| |||| || || || Sbjct 801137 GGCGATGACGATGATCCCAGGGTTGCCCTCGAAGCCGTCCATCTCGGTCAGCAGCTGGTT 801196 Query 14182 GATGGTTTGTTCGCGTTCATCATTCGCA--GGCATACCACCCGCACTGCGTTGCTTACCG 14239 | ||| || || || || || ||| | |||| | | |||| | ||| || || Sbjct 801197 CAGGGTCTGCTCCCGCTCGTCGTTCCCTCCGGCAAAGC--CCGCCCCGCGCTGACGGCCC 801254 Query 14240 ACGGCGTCAATTTCATCGATGAAAACGATACATGG----TTGATTTTCACGGGCAACTTC 14295 ||||| ||||| || ||||| |||| ||| ||||| || | ||| | | ||| Sbjct 801255 ACGGCATCAATCTCGTCGATAAAAATGATGCATGGCGCGTTCTTCTTCGCCTG----TTC 801310 Query 14296 AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAAT---TGGC 14352 || ||||| ||||| | | |||||| || |||||||||||||| ||||| | | | Sbjct 801311 GAACATATCGCGCACACGCGAGGCACCCACCCCCACAAACATCTCAACAAACTCCGAGCC 801370 Query 14353 GGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGT 14412 ||||| | ||||||||| ||| || || ||||||| |||| || || || || Sbjct 801371 GGCGGCCGA---GATGAAGGGCACGCCCGACTCCCCCGCGACGGCTTTAGCCAGCAGTGT 801427 Query 14413 CTTCCCCGTCCCTGG 14427 ||| |||||||| || Sbjct 801428 CTTACCCGTCCCGGG 801442 >seq4 Length=1364975 Score = 104 bits (114), Expect = 3e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||| || ||||||||||||||||||||||||| || || ||||| ||||| ||||| Sbjct 237844 GGCATCAGGCCCCGCTTCTTCAACCAGAAAATCGAGCAGAAGGAGCCGGAGAAAAAGATG 237785 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAAC 130195 |||||||| || || || | | ||||| ||||| || | |||| || || Sbjct 237784 CCCTCCACGGCTGCAAAGGCGATCAAGCGCTCGGCAAAAGACGCGTACTTGCGGTCGCAC 237725 Query 130196 CACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAG 130255 ||| | |||||| ||||||| || ||| |||||||||| || || | ||| Sbjct 237724 CACCGGAGCGCCCAACGCGCCTTGCGTCGGACACAAGGGACGGTCTCAATGGCGTTTAAG 237665 Query 130256 AGTTCCTTCTTTTCTGATGGATCTTTGATGTA 130287 || | | || || ||||| | |||||||| Sbjct 237664 AGCTTGTGTTTCTCGGATGGGTTCTTGATGTA 237633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618429912379040