Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq29 141 1e-28 seq6 132 6e-26 seq1 125 8e-24 >seq29 Length=316797 Score = 141 bits (156), Expect = 1e-28 Identities = 274/402 (68%), Gaps = 2/402 (0%) Strand=Plus/Minus Query 104616 TCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAG 104675 |||| || ||||| ||||||||||| ||| | || | || || |||| ||||| | Sbjct 131224 TCTACCTGGAGCCGTGGCACGCGGACATCTTTGAAGTGCTGGACCTGCGGAAGAACCACG 131165 Query 104676 GTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCA 104735 | | |||||||||||| || |||||||||| | || |||||||| || ||||||| Sbjct 131164 GAAAGGAGGAGGCGCGGGCGCGGGATCTCTTCTATGGACTATGGATTCCCGACCTCTTCA 131105 Query 104736 TGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTC 104795 || |||| || |||||| ||| | ||||| ||| | ||||| || || || |||| Sbjct 131104 TGGAGAGGGTGGAGGAGGATGGGACCTGGTCCCTCATGTGTCCCGATCAGTGCCCCGGTC 131045 Query 104796 TCTCCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGT 104854 || | || |||| || ||| || | ||| || ||| ||||| ||| || Sbjct 131044 TCGCGGACTGCC-ACGGCCAGGCCTTCCGGGACCTATATTTAAAATACGAACGAGAGGGC 130986 Query 104855 CGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACC 104914 || | | ||| |||| ||| || ||||| || || | | || || | Sbjct 130985 CGAGTCAAGAAGACAGTGCGTGCTCAGGACTTGTGGTTTGCCATCTTGGACTCGCAGATT 130926 Query 104915 GAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAG 104974 ||||| || || || |||||||| ||||| ||||| || |||| ||||| || ||| || Sbjct 130925 GAGACGGGCACGCCCTACATGCTGTACAAGGACGCTTGCAACCTGAAGAGCAACCAACAG 130866 Query 104975 AATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATC 105016 || ||||| |||||| || ||||| || || || ||| Sbjct 130865 AACTTGGGCACCATCAAGTCCTCGAATCTGTGCACCGAGATC 130824 >seq6 Length=1241202 Score = 132 bits (146), Expect = 6e-26 Identities = 533/822 (65%), Gaps = 33/822 (4%) Strand=Plus/Plus Query 104213 ATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATT 104272 ||||| ||| ||| ||||| ||||||| ||||| || ||||| || || ||||| Sbjct 393533 ATGGAGCGCCCCCAGCACATGATCATGCGTGTGGCAATTGGTATCCACAAAGAGAACATT 393592 Query 104273 GATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCA 104332 || | | ||||||| ||| | ||||| | | |||| || || || || Sbjct 393593 GACGCGGCGCTGGAGACCTACAATCTCATGTCGCTCAAACTTTTCACGCATGCTACGCCT 393652 Query 104333 ACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAAC 104392 || || |||||||| || ||||| | |||||| | ||| |||||||| | ||| Sbjct 393653 ACACTTTTCAATGCCGGCACACCGCGGCCCCAACTCTCCTCCTGCTTCCTCCTGACCATG 393712 Query 104393 AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAG 104452 ||||||||||| ||| |||| ||||| | || || | | | || || || || || Sbjct 393713 AAGGAGGACTCCATCGACGGCATCTACGACACCCTCAAGCAATGCGCTGCCATTTCCAAA 393772 Query 104453 TGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGC-CAATAAATCTCGT--ATT 104509 | || || || ||||| | |||||| | | | || | | | ||| | ||| Sbjct 393773 TTTGCGGGTGGGATTGGCGTATCCATCCACAACATTCGGGCGCGAGA---CTCCTACATT 393829 Query 104510 CGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACA 104569 || || | || || || | || || | || ||||| ||||| || |||| || Sbjct 393830 CGTGGATCGAACGGCACCTCCAACGGCATCGTACCTATGCTCCGCGTTTTCAACGATACG 393889 Query 104570 GCGCGCTATGTAAATCAAGCTG--GGC-GTCGAAAGGGATCTATCGCAGTCTATCTTGAG 104626 || ||||| || | || | | ||| || ||||| || |||| |||| || ||| Sbjct 393890 GCCCGCTACGTCGACCAGGGCGGAGGCAAGCGCAAGGGTTCCTTCGCCATCTACCTAGAG 393949 Query 104627 CCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAG 104686 || ||||| || || ||| | || ||||| || ||||| ||||| || ||||| | Sbjct 393950 CCCTGGCATGCAGACATCTTTGAATTCCTGGACCTGCGTAAGAACCACGGCAACGAGTTG 394009 Query 104687 GCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGT 104745 | || |||| || ||||| |||| ||| ||||||| || || || |||||| | | || Sbjct 394010 GAGC-GTGCACGTGATCTGTTCTACGCCCTCTGGACGCCCGACCTGTTCATGCGGCGCGT 394068 Query 104746 TGAG-GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATG 104804 ||| | || || | ||||| || ||||| || || || || || || | || | Sbjct 394069 GGAGAGCGA-CGGGGACTGGTCCCTTTTTTGCCCCAACGAGTGCCCGGGCCTGGCGGACG 394127 Query 104805 CCGTG-GGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACT 104863 ||| || ||||||||| | || ||| | | ||||| ||||| || ||| | Sbjct 394128 -TGTGCGGCGAGGAGTTTAACCAGCTCTACGCCAGCTACGA-GAAGA--GT-GGGAAAGC 394182 Query 104864 GCG-ACGGT--------GCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACC 104914 || | ||| ||||| || | ||| || ||||| | || || Sbjct 394183 ACGCAAGGTTATTAAGGCCCAGCAGC-----TCTGGTTCGCGATTCTGGACTCCCAGGTG 394237 Query 104915 GAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAG 104974 ||||| || || || |||||||| | ||| |||||||| |||| || || || || Sbjct 394238 GAGACAGGCACGCCTTACATGCTGTTCAAGGACGCCTGCAACCTGAAATCAAACCAGCAG 394297 Query 104975 AATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATC 105016 || ||||| ||||| |||||||| || || || ||| Sbjct 394298 AACTTGGGCACCATCAAATCATCCAATCTGTGCACGGAGATC 394339 >seq1 Length=1546440 Score = 125 bits (138), Expect = 8e-24 Identities = 255/375 (68%), Gaps = 18/375 (5%) Strand=Plus/Plus Query 9523 ACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGC 9582 |||||| ||||| || || || || | || | || | || || | ||||| || || Sbjct 801077 ACGATCGAAGCGGCCCGGGCGGAGCAAGGCCTGGTCCAAGACGTCTGCACGATTGGTGGC 801136 Query 9583 GGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTT 9642 ||||||||| | || || | | || || || |||||||| |||| || ||||| Sbjct 801137 GGCGATGACGATGATCCCAGGGTTGCCCTCGAAGCCGTCCATCTCGGTCAGCAGCTGGTT 801196 Query 9643 AATAGTTTGTTCCCGTTCATCATTCGCT--GGCATACCACCAGCACTGCGTTGCTTTCCC 9700 | || || ||||| || || ||| || |||| | || || | ||| || ||| Sbjct 801197 CAGGGTCTGCTCCCGCTCGTCGTTCCCTCCGGCAAA--GCCCGCCCCGCGCTGACGGCCC 801254 Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATG----GTTGATTTTCGCGAGCGACTTC 9756 |||||||||||||| || || || | |||||||| ||| | ||||| | ||| Sbjct 801255 ACGGCATCAATCTCGTCGATAAAAATGATGCATGGCGCGTTCTTCTTCGCCTG----TTC 801310 Query 9757 AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG---C 9813 || | ||| || |||||| ||| ||||| || ||||||||||| ||||| | | | Sbjct 801311 GAACATATCGCGCACACGCGAGGCACCCACCCCCACAAACATCTCAACAAACTCCGAGCC 801370 Query 9814 GGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 9873 ||||| | ||||||||| || || || ||||| | |||| || || || || Sbjct 801371 GGCGGCCGA---GATGAAGGGCACGCCCGACTCCCCCGCGACGGCTTTAGCCAGCAGTGT 801427 Query 9874 CTTACCCGTACCTGG 9888 ||||||||| || || Sbjct 801428 CTTACCCGTCCCGGG 801442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583255813120160