Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq684 165 2e-35 seq4 132 1e-25 >seq684 Length=114989 Score = 165 bits (182), Expect = 2e-35 Identities = 219/303 (72%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 349585 ATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGC 349644 || |||| |||||||||||| | |||||||||||||| || || ||||||||||| | Sbjct 35312 ATTTTTAAATGAAACAGTAACAAAAGCTGTTATTACTGTCCCTGCATATTTTAATGACTC 35371 Query 349645 CCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGAT 349704 || | ||||||||||| || || | ||||| || ||| | || ||| | || || Sbjct 35372 TCAAAGACAAGCAACAAAAGACGCAGGTAAAATTGCAGGATTAGAAGTACTACGTATTAT 35431 Query 349705 TAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaa 349764 |||||||| || || ||||| |||| |||||| | || |||| | ||| | | Sbjct 35432 AAATGAACCAACAGCCGCAGCTCTTGCTTATGGGTTAGACAAAA-----AATCAA-ATGA 35485 Query 349765 aaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGA 349824 || ||| | ||||||||||||||||||||||| ||||| || || | || | ||| Sbjct 35486 AACAATTTTAATTTTTGATTTAGGTGGTGGTACATTTGACGTTTCTATTTTAGAAGTTGG 35545 Query 349825 AGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTT 349884 || || | |||||||| |||||| || || |||| || | ||||| || ||||| Sbjct 35546 GGATGGTGTATTTGAAGTATTAGCAACGGCAGGAGATAGCCACTTAGGTGGTGATGATTT 35605 Query 349885 TGA 349887 ||| Sbjct 35606 TGA 35608 Score = 96.9 bits (106), Expect = 1e-14 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 183681 TCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTCCG 183740 |||||||| ||||||||||| || |||| || || || ||| |||||||||| || Sbjct 35608 TCAAAATCATCACCACCTAAGTGGCTATCTCCTGCCGTTGCTAATACTTCAAATACACCA 35549 Query 183741 TCTTCAATATTTAAAATTGATACATCAAATGTACCACCACCCAAATCAAAA 183791 || ||| | |||||| || || ||||||||||||||||| ||||||||| Sbjct 35548 TCCCCAACTTCTAAAATAGAAACGTCAAATGTACCACCACCTAAATCAAAA 35498 >seq4 Length=1364975 Score = 132 bits (146), Expect = 1e-25 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||| ||||| |||| || || | ||| || ||||||||||| ||||| || || ||||| Sbjct 829194 ACCGCCACGCAATCGCAGGACCAAATGTAGGGTAGACTCTTTCTGAATGTTGTAGTCAGA 829253 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 || || ||||| || || || || || || ||||| || || || ||||||||||| || Sbjct 829254 CAACGTGCGCCCGTCCTCCAGCTGCTTCCCCGCAAAAATGAGGCGCTGCTGATCAGGGGG 829313 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 || || || || |||||||| || || ||||| || |||| ||| || || || Sbjct 829314 GATACCCTCCTTGTCCTGAATCTTCTGCTTCACATTCTCGATCGTGTCACTGGGCTCCAC 829373 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | ||||| || || || || || ||||| || ||||| Sbjct 829374 GTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTAACAAAGATTTGCAT 829421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515241120689252