Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq6 288 1e-72 seq29 262 4e-65 seq13 138 1e-27 seq10 82.4 8e-11 seq4 82.4 8e-11 >seq6 Length=1241202 Score = 288 bits (318), Expect = 1e-72 Identities = 488/691 (71%), Gaps = 16/691 (2%) Strand=Plus/Plus Query 53273 TTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGC 53332 || ||||| || ||||| || || ||||| || || || | || || | || | Sbjct 393635 TTCACGCATGCTACGCCTACACTTTTCAATGCCGGCACACCGCGGCCCCAACTCTCCTCC 393694 Query 53333 TGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAG 53392 |||||||| || | |||||||| ||||| ||||||||||||||||| || |||||| | Sbjct 393695 TGCTTCCTCCTGACCATGAAGGAGGACTCCATCGACGGCATCTACGACACCCTCAAGCAA 393754 Query 53393 TGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGG--TATCCACTGCTCGAACGTCCGTG 53450 || || ||| ||||| | ||||||| || || |||||| | | | ||| | || | Sbjct 393755 TGCGCTGCCATTTCCAAATTTGCGGGTGGGATTGGCGTATCCA-TCCAC-AACATTCGGG 393812 Query 53451 CGAACGGCACACCAATCAA--GGGGA-CGAACGGCGTCGCCGATGGAATCGTGCCTATGC 53507 || || || || | || | ||| |||||||| | || | || ||||| ||||||| Sbjct 393813 CG--CGAGACTCCTA-CATTCGTGGATCGAACGGCACCTCCAACGGCATCGTACCTATGC 393869 Query 53508 TCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGT 53567 ||||||| |||||| | |||||||| |||||| ||||||| || || ||||||||||| | Sbjct 393870 TCCGCGTTTTCAACGATACGGCCCGCTACGTCGACCAGGGCGGAGGCAAGCGCAAGGGTT 393929 Query 53568 CGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTC 53627 | |||||||||||||| ||||| ||||| || ||||| | || || || || |||||| Sbjct 393930 CCTTCGCCATCTACCTAGAGCCCTGGCATGCAGACATCTTTGAATTCCTGGACCTGCGTA 393989 Query 53628 TGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTT-TACAGCTCTGTGGATTCC 53685 ||| || || |||| | ||| ||| ||||| ||||| ||| || || |||| || Sbjct 393990 AGAACCACGGCAACGAGTTGGAGCG-TGCACGTGATCTGTTCTAC-GCCCTCTGGACGCC 394047 Query 53686 GGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGA 53745 ||||| ||||||| ||||||| |||| ||| |||| ||| | ||||| ||||| Sbjct 394048 CGACCTGTTCATGCGGCGCGTGGAGAGCGACGGGGACTGGTCCCTTTTTTGCCCCAACGA 394107 Query 53746 GTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTACGC 53805 |||||| ||||| || || | ||| |||||||||||| || | || | |||| Sbjct 394108 GTGCCCGGGCCTGGCGGACGTGTGCGGCGAGGAGTTTAACCAGCTCTACGCCAGCTACG- 394166 Query 53806 AGTTCAGGGCCGCTACAAG-AAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCA 53864 || || | || | ||| | ||||| | || | ||| || || || Sbjct 394167 AGAAGAGTGGGAAAGCACGCAAGGTTATTAAGGCCCAGCAGCTCTGGTTCGCGATTCTGG 394226 Query 53865 AGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGA 53924 | |||||||||||| || ||||| |||||| | |||||| | |||| ||| Sbjct 394227 ACTCCCAGGTGGAGACAGGCACGCCTTACATGCTGTTCAAGGACGCCTGCAACCTGAAAT 394286 Query 53925 GCAACCAGAAGAACATCGGCGTCATCAAATC 53955 |||||| ||||| | ||| ||||||||| Sbjct 394287 CAAACCAGCAGAACTTGGGCACCATCAAATC 394317 Score = 199 bits (220), Expect = 4e-46 Identities = 555/835 (66%), Gaps = 40/835 (5%) Strand=Plus/Plus Query 55127 GTTGTGACTCGGAACCTGAACCGGGTCATCGACAAGAATTACTACCC-GACT--GAAGCG 55183 || ||||| || ||||||||||| ||||| |||| || |||||||| | | ||||| Sbjct 394478 GTGGTGACACGAAACCTGAACCGCGTCATAGACATCAACTACTACCCTGTCGAGGAAGCC 394537 Query 55184 GCGCGCAAGTCCAACCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGAC 55243 |||| || ||| | || ||||| ||||||| ||||| || ||||| ||||| ||| Sbjct 394538 AGGCGC---TCGAACATGCGACACCGCCCCATCGGGATCGGCGTGCAGGGTTTGGCGGAC 394594 Query 55244 ATCTTCATGATGCTCGGATTGCCCTTCGA--CTCGGAACCTGCTCGAGAAATTAACCAGG 55301 |||||| | | | |||| || ||||| ||| | | || | | ||||| ||| Sbjct 394595 GCCTTCATCAAGATGCGATTCCCATTCGAGTCTCCGGAG--GCCCAGCAGCTTAACAAGG 394652 Query 55302 ACATCTTC-AGTCGCATCTACTTTGCAGCGCTCGAGGAGTCGTGTCATCTGGCTATGAGC 55360 |||| ||| || | ||| ||||| | ||| | |||| |||| | | || |||| Sbjct 394653 ACATTTTCGAGAC-CATGTACTTCGGGGCGGTAGAGGCGTCGATGGAGATCGCGATGAAG 394711 Query 55361 GAGGGGACCTACGAGACGTTC-CGTGATTCGCCAGCTGA-CAAGGGACTTCTCCAGTTCG 55418 ||||| |||||||||| ||| | | | | ||| ||| |||||| | |||| |||| Sbjct 394712 GAGGGTCCCTACGAGACCTTCGCCGGCTCCCCCA--TGAGCAAGGGCGTCTTCCAATTCG 394769 Query 55419 ATCTATGGGGCAAGTCTGACCCCATGT------------TTGACAAGTTGAAGCATGACA 55466 | | |||||| ||||||| | | | | ||| | || | | | Sbjct 394770 ACATGTGGGGCG----TGACCCCCTCAACTCGCTGGGACTGGGCCGGTTTACGCTTCAAA 394825 Query 55467 TT-CACTTGTGGGGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACG 55525 | || | || | |||||||| || | | || || ||||| ||||| || || Sbjct 394826 GTGCAGGAGCACGGTGTCCGCAACTCACTATTGCTCGCACCCATGCCTACCGCATCTACT 394885 Query 55526 GCTCAGATCATGGGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGC 55585 || |||||| |||||||||||||| | | ||||| | ||| | ||||| ||| || Sbjct 394886 GCGCAGATCCTGGGCAACAACGAGTCTGTTGAGCCTTTCACATCGAACATGTACTCCCGT 394945 Query 55586 CGGACCCTAGCAGGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAG 55645 || | || || || || || | |||||| |||| || ||||| || | Sbjct 394946 CGCGTGTTGGCGGGCGAATTCACGGTGGTGAACAAGTACCTGCTCCGCGACCT-CATC-G 395003 Query 55646 ATCAA--CAAGTGGAACCCGCAGATCAAGACGGATATTGTGCGGAACGGGGGGTCCGTCC 55703 | ||| | ||||| | | || | | ||| || | ||| |||| || |||| Sbjct 395004 ACCAAGGCCTGTGGACTTCTGAAGTCCGAAATCAAATTATGGGCAACAGGGGCTCAGTCC 395063 Query 55704 AGAATCTGG--AG-ATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTC 55760 ||||| ||| || || |||| | |||||||| | ||| ||| ||||||||||| | Sbjct 395064 AGAATGTGGCCAGCATCCCTCGGGAGCTCAAGGACCTGTACAAGACAGTGTGGGAGATCC 395123 Query 55761 CACAGAAGAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGT 55820 |||||| | |||| ||| | || || || || || |||||| ||||| |||| Sbjct 395124 GGCAGAAGTGCGTGATCGACCAGGCCGCCGACCGCGGCGCCTACATCTGTCAGTCGCAGT 395183 Query 55821 CTCTGAACATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACG 55880 |||| || ||| ||| ||||| | | || || | | ||| |||||||| || Sbjct 395184 CTCTCAATATCCATTTGGCCAATCCGACGCCTGCACAGCTCACCTCCATGCACTTCTATT 395243 Query 55881 GGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGACCCGCGCCAAGGC 55935 ||||||||||| |||||||| || |||||||| || |||||||| ||||||| Sbjct 395244 CCTGGAAGAAGGGGCTCAAGACCGGCATGTACTACCTACGGACCCGGCCCAAGGC 395298 >seq29 Length=316797 Score = 262 bits (290), Expect = 4e-65 Identities = 525/765 (69%), Gaps = 10/765 (1%) Strand=Plus/Minus Query 53196 TGCGCGTCGCCTTGGGTATCCACGGTGACGA-CTACACGCGTGTCCGTGAGACGTACGAC 53254 ||||||| ||| | |||||||| || || || || | ||| | | ||||| ||||| Sbjct 131605 TGCGCGTTGCCCTTGGTATCCATGGAGAGGATCTGCCCGCC-GCCTTGGAGACCTACGAG 131547 Query 53255 TTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAAT 53314 | |||||| | |||| || | |||||| | || || || ||| |||| || ||| | Sbjct 131546 CTCATGAGCAACAAGTGGTTCATCCACGCCTCCCCTACTCTTTTCCACGCGGGCACGCGT 131487 Query 53315 CACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATC 53374 ||| |||||||| |||||||| |||| ||| | | |||||||||| || ||| Sbjct 131486 TTCCCGCAGATGTCCTCGTGCTTCCTCCTGGCCATGCAAGCGGACTCGATCGTTGGTATC 131427 Query 53375 TACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC-CA 53433 ||||| ||||| ||| |||| ||| || |||| | |||| || ||||| || | Sbjct 131426 TACGACACGCTGAAGCAGTGCGCCGTGATAAGCAAGGCGGCGGGGGGAATCGGCCTCTCG 131367 Query 53434 CTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGC-CGATG 53492 | | | ||| |||| ||| ||||| | || ||||| ||||| || | || | | | Sbjct 131366 GTCCAC-AACATCCGCGCGCACGGCGCCTACATTAAGGGCACGAAGGG-GACGAGCAACG 131309 Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552 | | ||||| |||||| | |||||| || |||||| || ||||| ||||||| || | Sbjct 131308 GTCTGGTGCCCATGCTCAGGGTCTTCGACGTCACGGCGCGCTACGTGGACCAGGGGGGAG 131249 Query 53553 GGAAGCG-CAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAG 53611 | ||| | | ||||| | || ||||||||||| |||||||||||||| ||||| | || Sbjct 131248 GCAAGAGGCCAGGGGCCTTT-GCCATCTACCTGGAGCCGTGGCACGCGGACATCTTTGAA 131190 Query 53612 TTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACA 53671 | || || ||||| ||| || || | || ||| ||| || || || || Sbjct 131189 GTGCTGGACCTGCGGAAGAACCACGGAAAGGAGGAGGCGCGGGCGCGGGATCTCTTCTAT 131130 Query 53672 GCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTG 53731 | || |||||||| |||||||||||| | | ||||||| |||| | | |||| ||| Sbjct 131129 GGACTATGGATTCCCGACCTCTTCATGGAGAGGGTGGAGGAGGATGGGACCTGGTCCCTC 131070 Query 53732 ATGTG-CCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGAT 53790 ||||| ||||| | |||||||||| ||| || | |||| ||| || || | Sbjct 131069 ATGTGTCCCGATC-AGTGCCCCGGTCTCGCGGACTGCCACGGCCAGGCCTTCCGGGACCT 131011 Query 53791 GTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATG 53850 ||| | |||| | ||||||| |||||||| || || | || | || Sbjct 131010 ATATTTAAAATACGAACGAGAGGGCCGAGTCAAGAAGACAGTGCGTGCTCAGGACTTGTG 130951 Query 53851 GGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTC 53910 | ||| ||| | | ||| | |||||||| ||||| |||||| |||||||| | Sbjct 130950 GTTTGCCATCTTGGACTCGCAGATTGAGACGGGCACGCCCTACATGCTGTACAAGGACGC 130891 Query 53911 GGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATC 53955 |||| |||||||||||| ||||| | ||| |||||| || Sbjct 130890 TTGCAACCTGAAGAGCAACCAACAGAACTTGGGCACCATCAAGTC 130846 >seq13 Length=890907 Score = 138 bits (152), Expect = 1e-27 Identities = 213/304 (70%), Gaps = 0/304 (0%) Strand=Plus/Minus Query 152022 CAAACGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCC 152081 || ||||||||||| |||||| | ||||||||| ||||| || || | |||||| || Sbjct 595771 CAGACGCGTGAAGACGTATCGAGGGCTGGCCGCGTCCTTCCCCCCCATGATCCGCGTGCC 595712 Query 152082 AAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAA 152141 ||||| || || | ||||| | |||||||| |||||||||||| || |||| Sbjct 595711 GAACTGCCCGCTCGGGTAGAGGAAACCAATGTTGTTGGAGCCCACGAAATTTTGGGCCAT 595652 Query 152142 ATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGAT 152201 ||| ||||| || | || || || ||||| || || |||| ||||| | || Sbjct 595651 GCCCACGATCGTCCCGTTCAAGGAGGCCTCGCCGTGATGGTAGGCCGAGTGCTCGGAGAC 595592 Query 152202 GTATCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTA 152261 ||| || |||| ||| || ||||| || || || | |||||| || | ||||| | Sbjct 595591 GTAGCCAGCCAGCTGGGCGACCTTAATCTCTTTCTTGAGGTTCCGTTTAAAGCAGGCAAA 595532 Query 152262 AATCACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGAT 152321 | || || ||||||| || |||| || |||| || ||| || || || |||| | | Sbjct 595531 GAGAACTTTCCGCTGGGCCGGCTTCAGCCCATCCATCAGGTGGGGGATGGAGCGCTGGTT 595472 Query 152322 GTCC 152325 |||| Sbjct 595471 GTCC 595468 >seq10 Length=1083023 Score = 82.4 bits (90), Expect = 8e-11 Identities = 102/137 (74%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 158939 CAATAAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGG 158998 ||| ||| || |||| | ||||||||| || ||||| | |||||||| || || | Sbjct 185607 CAACAAATTCTCGGACGGGGTGCGTCTCGCCCGTCGCCAGGACAAAGTCATCGGGGGTGT 185548 Query 158999 GCTGTTGGAGCATGAGCCACATGGCCTCG-ACGTAATCCTGCGCGTGACCCCAGTCGCGC 159057 || || ||||| | ||||||| ||||| || || || | || || |||||||| ||| Sbjct 185547 CGTGCTGCAGCATCATCCACATG-CCTCGTACATAGTCACGGGCATGGCCCCAGTCACGC 185489 Query 159058 TTGGCATCCATGTTCCC 159074 |||||||||| ||| || Sbjct 185488 TTGGCATCCAAGTTGCC 185472 >seq4 Length=1364975 Score = 82.4 bits (90), Expect = 8e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 75111 TCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAA 75170 || ||||| ||||||| | | | |||||| | || |||||||||||||||||||| || Sbjct 237377 TCGTTTGAGAAATTCAAGGCCAAATTCTCGTTCACAATGCCGTCCGAGGCGGCGAAGAAG 237318 Query 75171 GCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGG 75230 || || || | || |||||| || || | ||| || | || ||||| ||| || | Sbjct 237317 GCGAGGACGTGTGAGACAAAGTGACGTTCGTTGTCCGTTAACTTTTCCCAGTCCGTCTTG 237258 Query 75231 TCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265 || || | || | ||| ||| |||||||||| Sbjct 237257 TCGTGGGCGAGGTCGAGCTCTTCGGCCGTCCAGAA 237223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547211321303200