Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq25 185 7e-42 >seq25 Length=633890 Score = 185 bits (204), Expect = 7e-42 Identities = 393/587 (67%), Gaps = 0/587 (0%) Strand=Plus/Minus Query 29873 TTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCT 29932 ||||||| || || | || |||||| || || || || || | |||| | |||||| Sbjct 456324 TTCAGCGCGTCTACATGATTCAGGTACACATGTGCATCCCCAATCGTGTGAATGAACTCT 456265 Query 29933 CCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATG 29992 || | || | || ||| ||||| | || | || | ||| | ||| ||| || Sbjct 456264 CCGGCTTTCAAGCCACAGACTTGAGCTACCAAGCGTGTCAAGAGTGCGTAAGAGGCAATA 456205 Query 29993 TTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCT 30052 || || || || || | ||||||||| | || | ||| || | |||||| ||||||||| Sbjct 456204 TTGAACGGCACACCCAACCCCATGTCTGCGGAACGCTGATACATCTGACAAGAGAGCTCT 456145 Query 30053 CCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAG 30112 ||||| |||||| || || || | ||| ||||| || || ||||| ||||| Sbjct 456144 CCGTCTGCCACGTAGAATTGGCAAAACATGTGACACGGCGGCAGGGCCATCTTTCCCAAA 456085 Query 30113 TCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGG 30172 || |||||||||||| | || |||||||| | || |||||||||| | ||||| | Sbjct 456084 TCCGCGGGGTTCCAGGCCGATACAATGATGCGGCGATCCTCTGGGTTGTCCTTGATGGTG 456025 Query 30173 TCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTG 30232 | || || ||| || | || | || | ||||||||| |||||||| Sbjct 456024 GTGATTGCCCGAGCCAACTGGTCGATGCCTTTGCCAGTGTAGTCTGCGTGCATGTCCGAA 455965 Query 30233 TACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCC 30292 ||||| || |||||||||| ||| ||||| ||||| || || |||| || ||||||||| Sbjct 455964 TACTCCGCCCCGAAATGCCGCCATTGGAAGCCGTAGACGGGGCCCAAATCCCCCTCTTCC 455905 Query 30293 CTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTT 30352 | ||| | |||| ||||||| | | || | || ||| |||||||||| Sbjct 455904 CGGTGAGAAAGGCCCAATTTGTCCAGATATTCCCGAGAGGAGTTCCCGTCCCAGATTCCA 455845 Query 30353 ACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCC 30412 | ||||| | | || | | || || || || |||||||| || || Sbjct 455844 ATTTTTTTCTCCTTCAAATAATTCGCATCGGTCGATCCGGAGATGAACCACAAGAGTTCT 455785 Query 30413 TCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30459 || | || | ||||||||||| |||||| ||||| | |||||| Sbjct 455784 TCGGCCACCCCGCGCCAAAAGACCCGCTTGGTGGTGAGCAAGGGAAA 455738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406307012894928