Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq684 668 0.0 >seq684 Length=114989 Score = 668 bits (740), Expect = 0.0 Identities = 745/992 (75%), Gaps = 12/992 (1%) Strand=Plus/Plus Query 176104 TGGGAGCAGTTTTGCCAGTGGGTCACCAATACAAACAACAGAATTTACGTTGGTTGGTTT 176163 ||||||| || ||| ||| |||| | ||| | ||| | | ||| | |||||||| Sbjct 68454 TGGGAGCGCTTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTC 68513 Query 176164 GGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGTTTTATCGTTGCATTTATT 176223 ||||| | ||||| || | | || ||| || || || ||| | || || || Sbjct 68514 GGTGTTTTAATGATCCCTACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCATC 68573 Query 176224 GCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTAGCAGGATCTCTACTCTAT 176283 |||||||| || || |||||||| ||||| || |||||||| || ||||| || | || Sbjct 68574 GCAGCACCTCCAGTAGATATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATAC 68633 Query 176284 GGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACGCAATCGGACTACACTTC 176343 ||||||||||| ||| |||| || || | ||||| || ||||| || || | |||||| Sbjct 68634 GGAAACAACATTATCACAGGTGCGGTTATTCCAAGTTCTAACGCTATTGGTATTCACTTC 68693 Query 176344 TACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGACCATACCAA 176403 |||||| | |||||||| || | || ||||||||||| ||||| || || || |||||| Sbjct 68694 TACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGGCTTTACAACGGTGGTCCTTACCAA 68753 Query 176404 CTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCT---TACATGGGACGCCAATGGGAA 176460 || || ||||| |||||| | | ||| | |||| ||||||||||| |||||||| Sbjct 68754 CTTGTAGTATTACACTTCTTATTAGGTGT---AGCTTGCTACATGGGACGTGAATGGGAA 68810 Query 176461 CTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCT 176520 ||||| ||| | |||| |||||||||||||| | || || | ||| || |||||| || Sbjct 68811 CTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCT 68870 Query 176521 GCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATG 176580 ||||| | ||||| ||| | | || ||| |||| ||||| ||||||||||||||| Sbjct 68871 GCAGCAAGTGCAGTATTCTTAATTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATG 68930 Query 176581 CCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAACATT 176640 ||| | || || || ||||| |||||||| ||||| |||||||||||||| ||||||||| Sbjct 68931 CCTTTAGGTATCTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATT 68990 Query 176641 CTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTTTTCTCA 176700 || |||||||||||||||||| ||| || || |||||||||||||||||| | ||| Sbjct 68991 CTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGT 69050 Query 176701 GCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAACCGAAAAC---GAA 176757 ||||||||||| |||||| || ||| | | | || ||| ||| || | | Sbjct 69051 GCAATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGTGA---AACTGAAGACGGTGTA 69107 Query 176758 TCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCA 176817 || ||||||||||||||||| |||||||||||||| || |||||||| ||||||||| Sbjct 69108 TCTGCTAACTACGGTTACAAATTTGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCA 69167 Query 176818 CACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTCAAGAAGTCTT 176877 |||||||||||||| ||| | |||||||| || || |||||| |||||| | | | Sbjct 69168 CACGGTTACTTTGGACGTTTAATCTTCCAATACGCAAGTTTCAACAACTCACGTGCTTTA 69227 Query 176878 CACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGC 176937 ||||||||| | || || | |||||||| | |||||||| ||||| | || || || Sbjct 69228 CACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGAATTAGC 69287 Query 176938 ACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTCTGGT 176997 ||||||||||||||| | ||||| |||||||||||||| || || | || | | ||| Sbjct 69288 ACAATGGCATTCAACTTAAACGGATTCAACTTCAACCAATCAGTTGTTGATAGCCAAGGT 69347 Query 176998 AAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATG 177057 ||||| || |||| || || | |||||||| | | ||||||||||| ||| Sbjct 69348 CGTGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATG 69407 Query 177058 CACGAGCGTAATGCTCACAACTTCCCACTTGA 177089 ||||| ||||| || ||||||||||| || || Sbjct 69408 CACGAACGTAACGCGCACAACTTCCCTCTAGA 69439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603489240122880