Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq25 168 6e-37 >seq25 Length=633890 Score = 168 bits (186), Expect = 6e-37 Identities = 321/466 (69%), Gaps = 10/466 (2%) Strand=Plus/Plus Query 34331 ATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGG--TTCCCATCTCGGG 34388 |||||||||| || ||||| || | ||||||||| ||| ||| || | ||| Sbjct 455849 ATCTGGGACGGGAACTCCTCTCGGGAATATCTGGACAAATTGGGCCTTTCTCACC--GGG 455906 Query 34389 AGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATC 34448 | ||||| || |||||||| |||||||| ||||| ||| | || || |||||||||||| Sbjct 455907 AAGAGGGGGATTTGGGCCCCGTCTACGGCTTCCAATGGCGGCATTTCGGGGCGGAGTATT 455966 Query 34449 GGGGGAGCGAAGCGGACTATTCGGG-ACAGGGAGCGGACCAGCTGCAGTACGTG--ATCG 34505 || | | || ||||| | || | ||| | || ||||| || | || | ||| Sbjct 455967 CGGACATGCACGCAGACTACACTGGCAAAGGCATCG-ACCAGTTG--GCTCGGGCAATCA 456023 Query 34506 ACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGG 34565 |||| | ||| ||||| || || | | ||| | | | || |||||||| || Sbjct 456024 CCACCATCAAGGACAACCCAGAGGATCGCCGCATCATTGTATCGGCCTGGAACCCCGCGG 456083 Query 34566 ATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATG 34625 || | |||||| || || ||||| |||| | |||||||||||||| || | | Sbjct 456084 ATTTGGGAAAGATGGCCCTGCCGCCGTGTCACATGTTTTGCCAATTCTACGTGGCAGACG 456143 Query 34626 GGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCA 34685 | ||||| || || ||| | ||||| || || | |||||||||||| || |||||||||| Sbjct 456144 GAGAGCTCTCTTGTCAGATGTATCAGCGTTCCGCAGACATGGGGTTGGGTGTGCCGTTCA 456203 Query 34686 ACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTG 34745 | ||||| |||||| || | || | || | ||||| ||| || ||| | | Sbjct 456204 ATATTGCCTCTTACGCACTCTTGACACGCTTGGTAGCTCAAGTCTGTGGCTTGAAAGCCG 456263 Query 34746 GGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCA 34791 | ||| | | || ||| | |||||||| ||| | |||||||| || Sbjct 456264 GAGAGTTCATTCACACGATTGGGGATGCACATGTGTACCTGAATCA 456309 Score = 168 bits (186), Expect = 6e-37 Identities = 321/466 (69%), Gaps = 10/466 (2%) Strand=Plus/Minus Query 6554 TGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCC 6613 || |||||||| | ||| |||||||| | ||| || | | ||| || | ||| || Sbjct 456309 TGATTCAGGTACACATGTGCATCCCCAATCGTGTGAATGAACTCTCCGGCTTTCAAGCCA 456250 Query 6614 ACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCT 6673 ||| ||||| | || | || | || |||||| ||||| ||||||||||| || Sbjct 456249 CAGACTTGAGCTACCAAGCGTGTCAAGAGTGCGTAAGAGGCAATATTGAACGGCACACCC 456190 Query 6674 AACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAG 6733 |||||||||||| | || || ||||| | ||| || || ||||| || | || |||||| Sbjct 456189 AACCCCATGTCTGCGGAACGCTGATACATCTGACAAGAGAGCTCTCCGTCTGCCACGTAG 456130 Query 6734 AATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCAC 6793 |||||||| | |||| ||||| || || |||||| | |||| |||||||| Sbjct 456129 AATTGGCAAAACATGTGACACGGCGGCAGGGCCATCTTTCCCAAATCCGCGGGGTTCCAG 456070 Query 6794 GCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGAT--CACGTACT 6851 || | | | ||| | | || || ||||| ||| | |||| ||| | || | Sbjct 456069 GCCGATACAATGATGCGGCGATCCTCTGGGTTGTCCTTGATGGTGGTGATTGCCCGAGC- 456011 Query 6852 GCAGCTGGTCCGCTCCCTGT-CCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCA 6910 || ||||| || | ||| | || | ||||| || | | || |||||||||||| Sbjct 456010 -CAACTGGT-CGATGCCTTTGCCAGTGTAGTCTGCGTGCATGTCCGAATACTCCGCCCCG 455953 Query 6911 AAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAA- 6969 || || | ||| ||||| |||||||| |||||||| || ||||| |||| | || ||| Sbjct 455952 AAATGCCGCCATTGGAAGCCGTAGACGGGGCCCAAATCCCCCTCTTCCC--GGTGAGAAA 455895 Query 6970 -CCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGAT 7014 ||| ||||||||| | || ||||| || |||||||||| Sbjct 455894 GGCCCAATTTGTCCAGATATTCCCGAGAGGAGTTCCCGTCCCAGAT 455849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448258567356480