Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq3 145 2e-29 seq4 134 3e-26 seq9 122 2e-22 >seq3 Length=1384164 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||| | ||| | || |||||||| || ||||| || || | || || | ||| ||||| Sbjct 138221 GACCAAGTGCAAGGTTGACTCTTTCTGAATGTTGTAGTCAGACAGCGTGCGTCCGTCTTC 138162 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 ||||||||| |||||||| || ||||| || || || || |||| || |||||||| || Sbjct 138161 CAGCTGCTTTCCTGCGAAAATTAGGCGCTGCTGATCGGGGGGAATGCCCTCCTTGTCTTG 138102 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 |||||||| ||||| ||||||||||| || | || || || | ||||| ||||| Sbjct 138101 AATCTTTTGCTTCACATTTTCGATGGTATCGCTGGGCTCGACATCCAATGTGATGGTCTT 138042 Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || ||||| || || | |||||| Sbjct 138041 GCCCGTCAGGGTCTTGACGAAGATCTGCAT 138012 >seq4 Length=1364975 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | || || || |||||||| || ||||| || || | | || | || || Sbjct 829210 AGGACCAAATGTAGGGTAGACTCTTTCTGAATGTTGTAGTCAGACAACGTGCGCCCGTCC 829269 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || || || ||||| || || ||||| || | || ||||||||| Sbjct 829270 TCCAGCTGCTTCCCCGCAAAAATGAGGCGCTGCTGATCAGGGGGGATACCCTCCTTGTCC 829329 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| || ||||| |||||| | || || ||||| ||||| ||| Sbjct 829330 TGAATCTTCTGCTTCACATTCTCGATCGTGTCACTGGGCTCCACGTCGAGCGTGATGGTC 829389 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| ||||| | ||||| Sbjct 829390 TTGCCCGTCAGCGTCTTAACAAAGATTTGCAT 829421 >seq9 Length=1164708 Score = 122 bits (134), Expect = 2e-22 Identities = 127/167 (76%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 210948 AGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGA 211007 || ||||| ||||| || ||||||||||| || || || ||||| || || ||||| || Sbjct 608009 AGTGTCCTCCCATCCTCGAGCTGCTTGCCGGCAAAAATGAGGCGCTGCTGATCAGGGGGG 608068 Query 211008 ACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACC 211067 | || |||||||||||||||||||| ||||| || || |||||||| | || || Sbjct 608069 ATCCCCTCCTTGTCCTGGATCTTTTGCTTCACATTCTCAATGGTGTCGCTGGGCTCCACG 608128 Query 211068 TCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || | ||| || ||||| ||||| || ||||| || || | ||||| Sbjct 608129 TCCAAAGTAATGGTCTTGCCCGTCAGGGTCTTAACGAAAATTTGCAT 608175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159141841481660