Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq683 172 1e-37 seq4 140 8e-28 seq3 136 9e-27 seq9 125 2e-23 seq684 104 6e-17 >seq683 Length=42213 Score = 172 bits (190), Expect = 1e-37 Identities = 151/187 (81%), Gaps = 1/187 (1%) Strand=Plus/Plus Query 7542 TGGTAATAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTT 7601 |||||||| ||| | ||||| |||||| | || | ||||| ||| ||||||| || || Sbjct 2242 TGGTAATAATCAATTATACAATGTTATTGTAACAGGACATGCGTTTATTATGATATTTTT 2301 Query 7602 TTTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGG 7661 ||| || ||||| ||| |||| || ||||| |||||||| || || |||||||||||||| Sbjct 2302 TTTCGTAATGCCCGTTCTGATTGGTGGTTTTGGAAATTGGTTTGTGCCTTTAATGATTGG 2361 Query 7662 TGCTCCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTC 7721 |||||||||||||||||| || | | || ||||| |||||||| ||| | |||||||| Sbjct 2362 TGCTCCTGATATGGCTTTCCCTCGAATGAATAATATTAGTTTTTGGTTATTGCCGCCTTC 2421 Query 7722 -CTTATT 7727 |||||| Sbjct 2422 TCTTATT 2428 Score = 163 bits (180), Expect = 7e-35 Identities = 206/282 (73%), Gaps = 1/282 (0%) Strand=Plus/Plus Query 7447 TATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATTATAAGG 7506 |||||||| ||||| || | |||| ||| || || | || ||| | | || | Sbjct 5373 TATTTAATTTTTGGGGGTGTAGCTGGAATTGCGGGAACAACTTTATCTGTTTTAATTCGA 5432 Query 7507 TTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTACAACGTT 7566 || ||| ||||| || || ||| | || |||||||| ||| | || || ||| Sbjct 5433 TTGGAACTAGCTCAACCCGGAAATCAGTTTTTATCTGGTAATAATCAATTATATAATGTT 5492 Query 7567 ATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGGC 7626 ||| | || | ||||| || ||||||| || |||||||| ||||| ||| |||| || Sbjct 5493 ATTGTGACAGGACATGCATTCATTATGATATTTTTTTTTGTAATGCCCGTTCTGATTGGT 5552 Query 7627 GGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAGG 7686 ||||| |||||||| || || |||||||||||||||||||| ||||||||||| || | Sbjct 5553 GGTTTTGGAAATTGGTTTGTGCCTTTAATGATTGGTGCTCCCGATATGGCTTTCCCTCGA 5612 Query 7687 CTTAACAATATAAGTTTTTGATTACTACCGCCTTC-CTTATT 7727 | || || || |||||||| ||| |||| ||||| |||||| Sbjct 5613 ATGAATAACATTAGTTTTTGGTTATTACCACCTTCTCTTATT 5654 Score = 105 bits (116), Expect = 2e-17 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || |||||||| || |||||||| || ||||| || || |||||||| ||||||||||| Sbjct 8858 AAAATTTGACCGTCTGTAATAGAAATTACATTGGTTGGAATATAAGCGGAAACATCACCA 8799 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586 ||||| ||||| | |||||| | ||||||| |||||||| || || |||||| Sbjct 8798 GCTTGAGTTTCAATAACAGGAAGAGCTGTTAAAGATCCACCTCCTAATGATTTATT 8743 Score = 96.9 bits (106), Expect = 8e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| |||||||||||||||||| || ||||| || ||||| | | |||||| || || | Sbjct 2828 ATACTTCAGGATGACCAAAAAACCAAAATAAGTGCTGATACAACACAGGATCACCACCAC 2769 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 | | ||| || |||| |||||||||| |||||||||||||| Sbjct 2768 CAGCTGGGTCGTAAAAAGTAGTATTAAAGTTTCTATCAGTTAA 2726 Score = 96.9 bits (106), Expect = 8e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| |||||||||||||||||| || ||||| || ||||| | | |||||| || || | Sbjct 6054 ATACTTCAGGATGACCAAAAAACCAAAATAAGTGCTGATACAACACAGGATCACCACCAC 5995 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 | | ||| || |||| |||||||||| |||||||||||||| Sbjct 5994 CAGCTGGGTCGTAAAAAGTAGTATTAAAGTTTCTATCAGTTAA 5952 Score = 96.9 bits (106), Expect = 8e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 372630 ACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTGTAAAACG 372689 ||||||| | |||||||||||||||| |||||||||||| ||| ||||| | |||| | | Sbjct 31204 ACAGAATTGGGGGTAGCGACTGTTTAGTAAAAACACAGGTCTCTGCTAATTCGTAAGAAG 31263 Query 372690 ATGTATAGGGTCTGACAC 372707 |||||||||| ||||||| Sbjct 31264 ATGTATAGGGACTGACAC 31281 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/140 (74%), Gaps = 1/140 (1%) Strand=Plus/Minus Query 7723 TTATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCG 7782 |||| || || ||||||| || |||| |||| |||||||||||| ||||||| Sbjct 42175 TTATGTCAAGAACTGGTAAGGTTTCGCGCGTATTATCGCATTAAACCACATGCTCCACCA 42116 Query 7783 CTTATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTG 7842 ||| || | | |||||| || ||||||||| ||||||||| ||||| | | |||| | Sbjct 42115 CTTGTATAGGCCCCCGTCAATTCCTTTGAGTTCCAACCTTGCGATCGTACTCCCCAGGCG 42056 Query 7843 GAATATTT-ACGCGTTAGCT 7861 || | ||| ||| |||| || Sbjct 42055 GAGTGTTTAACGTGTTAACT 42036 >seq4 Length=1364975 Score = 140 bits (154), Expect = 8e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| | || |||||| | || || || || ||||| || | ||||| || | ||| || Sbjct 829200 ACGCAATCGCAGGACCAAATGTAGGGTAGACTCTTTCTGAATGTTGTAGTCAGACAACGT 829259 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||| || || ||||||||||| || || || || || || || || || || ||||| Sbjct 829260 GCGCCCGTCCTCCAGCTGCTTCCCCGCAAAAATGAGGCGCTGCTGATCAGGGGGGATACC 829319 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || ||||| ||||||||| ||||| ||||| || |||||||| | Sbjct 829320 CTCCTTGTCCTGAATCTTCTGCTTCACATTCTCGATCGTGTCACTGGGCTCCACGTCGAG 829379 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| ||||||||||||| || || | || | |||||| Sbjct 829380 CGTGATGGTCTTGCCCGTCAGCGTCTTAACAAAGATTTGCAT 829421 >seq3 Length=1384164 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 || ||| | ||| | || || ||||| || | ||||| || | || || | || || Sbjct 138224 CAAGACCAAGTGCAAGGTTGACTCTTTCTGAATGTTGTAGTCAGACAGCGTGCGTCCGTC 138165 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || ||||| || || || || || ||||| ||||| || |||||||| Sbjct 138164 TTCCAGCTGCTTTCCTGCGAAAATTAGGCGCTGCTGATCGGGGGGAATGCCCTCCTTGTC 138105 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||| ||||||||||||||| ||||||||| || || || || || || ||||| || Sbjct 138104 TTGAATCTTTTGCTTCACATTTTCGATGGTATCGCTGGGCTCGACATCCAATGTGATGGT 138045 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||||||||| || || | ||| | ||||| Sbjct 138044 CTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 138012 >seq9 Length=1164708 Score = 125 bits (138), Expect = 2e-23 Identities = 126/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 225550 GTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATA 225609 || |||||||| || |||||||| || || || || || || || || || || || || Sbjct 608012 GTCCTCCCATCCTCGAGCTGCTTGCCGGCAAAAATGAGGCGCTGCTGATCAGGGGGGATC 608071 Query 225610 CCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCT 225669 || |||||||| |||||||||||||||||| || |||||||| || |||||||| Sbjct 608072 CCCTCCTTGTCCTGGATCTTTTGCTTCACATTCTCAATGGTGTCGCTGGGCTCCACGTCC 608131 Query 225670 AACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || ||||||||||||| || || | ||| | |||||| Sbjct 608132 AAAGTAATGGTCTTGCCCGTCAGGGTCTTAACGAAAATTTGCAT 608175 >seq684 Length=114989 Score = 104 bits (114), Expect = 6e-17 Identities = 100/127 (79%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| ||||| ||||| ||| ||||||||||||| ||||||||||| | | | Sbjct 48948 TGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATCCTCCACCGCTTGTGCGGGCCC 48889 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA-TTTACGC 7854 |||||| || |||||||||| | |||||| |||| | | |||| || ||| || |||| Sbjct 48888 CCGTCAATTCCTTTGAGTTTCACTCTTGCGAGCGTACTCCCCAGGCGGGATACTTAACGC 48829 Query 7855 GTTAGCT 7861 ||||||| Sbjct 48828 GTTAGCT 48822 Score = 104 bits (114), Expect = 6e-17 Identities = 100/127 (79%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| ||||| ||||| ||| ||||||||||||| ||||||||||| | | | Sbjct 113862 TGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATCCTCCACCGCTTGTGCGGGCCC 113921 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA-TTTACGC 7854 |||||| || |||||||||| | |||||| |||| | | |||| || ||| || |||| Sbjct 113922 CCGTCAATTCCTTTGAGTTTCACTCTTGCGAGCGTACTCCCCAGGCGGGATACTTAACGC 113981 Query 7855 GTTAGCT 7861 ||||||| Sbjct 113982 GTTAGCT 113988 Score = 86.0 bits (94), Expect = 1e-11 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 372644 AGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTGTAAAACGATGTATAGGGTCTG 372703 ||||||||||||| ||||||||||| ||||||||||| |||| ||||||||| ||| ||| Sbjct 51559 AGCGACTGTTTACCAAAAACACAGGTCTCCGCTAAGTCGTAAGACGATGTATGGGGGCTG 51618 Query 372704 AC 372705 || Sbjct 51619 AC 51620 Score = 86.0 bits (94), Expect = 1e-11 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 372644 AGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTGTAAAACGATGTATAGGGTCTG 372703 ||||||||||||| ||||||||||| ||||||||||| |||| ||||||||| ||| ||| Sbjct 111251 AGCGACTGTTTACCAAAAACACAGGTCTCCGCTAAGTCGTAAGACGATGTATGGGGGCTG 111192 Query 372704 AC 372705 || Sbjct 111191 AC 111190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192520748954696