Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq25 134 1e-26 >seq25 Length=633890 Score = 134 bits (148), Expect = 1e-26 Identities = 379/589 (64%), Gaps = 6/589 (1%) Strand=Plus/Minus Query 29646 TCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTC 29705 |||||| || || || | ||||| || || ||||| || | ||||| | ||||||| Sbjct 456323 TCAGCGCGTCTACATGATTCAGGTACACATGTGCATCCCCAATCGTGTGAATGAACTCTC 456264 Query 29706 CCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGT 29765 | | || | || ||| ||||| | || | || | ||| | ||| ||| || | Sbjct 456263 CGGCTTTCAAGCCACAGACTTGAGCTACCAAGCGTGTCAAGAGTGCGTAAGAGGCAATAT 456204 Query 29766 TAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTC 29825 | || ||||| || | ||||||||| | || | ||| || | ||| || |||||||||| Sbjct 456203 TGAACGGCACACCCAACCCCATGTCTGCGGAACGCTGATACATCTGACAAGAGAGCTCTC 456144 Query 29826 CGTCGCTCACGTAAAACTGACA---CATGGCATGGCACGGAGGAAGGGCCATGAGACCCA 29882 |||| |||||| || || || |||| || ||||| || |||||||| |||| Sbjct 456143 CGTCTGCCACGTAGAATTGGCAAAACATG---TGACACGGCGGCAGGGCCATCTTTCCCA 456087 Query 29883 AGTCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGA 29942 | || |||||||||||| | || |||||||| | || |||||||||| | ||||| Sbjct 456086 AATCCGCGGGGTTCCAGGCCGATACAATGATGCGGCGATCCTCTGGGTTGTCCTTGATGG 456027 Query 29943 GGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNN 30002 | | || || ||| || | || | || | |||||||| Sbjct 456026 TGGTGATTGCCCGAGCCAACTGGTCGATGCCTTTGCCAGTGTAGTCTGCGTGCATGTCCG 455967 Query 30003 NNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 30062 ||||||||| ||| ||||| ||||| || || |||| || ||||||| Sbjct 455966 AATACTCCGCCCCGAAATGCCGCCATTGGAAGCCGTAGACGGGGCCCAAATCCCCCTCTT 455907 Query 30063 CCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT 30122 ||| ||| | |||| ||||||| | | || | || ||| |||||||||| Sbjct 455906 CCCGGTGAGAAAGGCCCAATTTGTCCAGATATTCCCGAGAGGAGTTCCCGTCCCAGATTC 455847 Query 30123 TTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCT 30182 | ||||| | | || | | || || || || |||||||| || | Sbjct 455846 CAATTTTTTTCTCCTTCAAATAATTCGCATCGGTCGATCCGGAGATGAACCACAAGAGTT 455787 Query 30183 CCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30231 | || | || | ||||||||||| |||||| ||||| | |||||| Sbjct 455786 CTTCGGCCACCCCGCGCCAAAAGACCCGCTTGGTGGTGAGCAAGGGAAA 455738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406159814122024