Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq25 185 6e-42 >seq25 Length=633890 Score = 185 bits (204), Expect = 6e-42 Identities = 393/587 (67%), Gaps = 0/587 (0%) Strand=Plus/Minus Query 27139 TTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCT 27198 ||||||| || || |||| |||||| || || || || || | ||||| | |||||| Sbjct 456324 TTCAGCGCGTCTACATGATTCAGGTACACATGTGCATCCCCAATCGTGTGAATGAACTCT 456265 Query 27199 CCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATG 27258 || | || | || ||| ||||| | || | || | ||| | ||| ||| || Sbjct 456264 CCGGCTTTCAAGCCACAGACTTGAGCTACCAAGCGTGTCAAGAGTGCGTAAGAGGCAATA 456205 Query 27259 TTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCT 27318 || || || || || | ||||||||| | || | ||| || | |||||| ||||||||| Sbjct 456204 TTGAACGGCACACCCAACCCCATGTCTGCGGAACGCTGATACATCTGACAAGAGAGCTCT 456145 Query 27319 CCATCGCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAG 27378 || || ||||| || || || | ||| ||||| || || ||||| ||||| Sbjct 456144 CCGTCTGCCACGTAGAATTGGCAAAACATGTGACACGGCGGCAGGGCCATCTTTCCCAAA 456085 Query 27379 TCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGG 27438 || |||||||||||| | || |||||||| | || |||||||||| | ||||| | Sbjct 456084 TCCGCGGGGTTCCAGGCCGATACAATGATGCGGCGATCCTCTGGGTTGTCCTTGATGGTG 456025 Query 27439 TCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTG 27498 | || || ||| || | || | || | ||||||| | |||||||| Sbjct 456024 GTGATTGCCCGAGCCAACTGGTCGATGCCTTTGCCAGTGTAGTCTGCGTGCATGTCCGAA 455965 Query 27499 TACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCC 27558 ||||| || |||||||||| ||||||||| ||||| || || |||| || ||||||||| Sbjct 455964 TACTCCGCCCCGAAATGCCGCCATTGGAAGCCGTAGACGGGGCCCAAATCCCCCTCTTCC 455905 Query 27559 CTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTT 27618 | ||| | |||| ||||||| | | || | || ||| |||||||||| Sbjct 455904 CGGTGAGAAAGGCCCAATTTGTCCAGATATTCCCGAGAGGAGTTCCCGTCCCAGATTCCA 455845 Query 27619 ACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCC 27678 | ||||| | | || | | || || || || |||||||| || || Sbjct 455844 ATTTTTTTCTCCTTCAAATAATTCGCATCGGTCGATCCGGAGATGAACCACAAGAGTTCT 455785 Query 27679 TCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 27725 || | || | ||||||||||| |||||| ||||| | |||||| Sbjct 455784 TCGGCCACCCCGCGCCAAAAGACCCGCTTGGTGGTGAGCAAGGGAAA 455738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369504119695604