Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq684 666 0.0 >seq684 Length=114989 Score = 666 bits (738), Expect = 0.0 Identities = 743/989 (75%), Gaps = 6/989 (1%) Strand=Plus/Plus Query 183187 TGGGAATCCTTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTT 183246 ||||| ||||||| ||||| || ||||| | ||||| | || | |||||||| Sbjct 68454 TGGGAGCGCTTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTC 68513 Query 183247 GGCACACTGATGATTCCAACTCTGTTGGCAGCAACCATCTGCTTCATCGTTGCCTTCGTC 183306 || | ||||| || || | || |||| || | |||||||||| | || ||| || Sbjct 68514 GGTGTTTTAATGATCCCTACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCATC 68573 Query 183307 GCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTAT 183366 || || ||||| || || ||||| || ||||| ||||| || ||||| || || | || Sbjct 68574 GCAGCACCTCCAGTAGATATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATAC 68633 Query 183367 GGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTC 183426 ||||||||||| ||| | ||||| ||| |||| ||| ||||| ||||| |||||||| Sbjct 68634 GGAAACAACATTATCACAGGTGCGGTTATTCCAAGTTCTAACGCTATTGGTATTCACTTC 68693 Query 183427 TATCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAA 183486 || || | |||||||| || || | || || ||||| || |||||||||||||||||| Sbjct 68694 TACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGGCTTTACAACGGTGGTCCTTACCAA 68753 Query 183487 CTCGTAGTCTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTG 183546 || ||||| || |||||| | | || || ||||||||||| ||||| |||||| | Sbjct 68754 CTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGCTACATGGGACGTGAATGGGAACTT 68813 Query 183547 TCTTACCGTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCT 183606 |||||| | || |||||||||||||| | || |||| || || || ||||| Sbjct 68814 AGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCA 68873 Query 183607 GCAACCGCTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCC 183666 |||| || || ||| | | || || |||| |||||| || |||||||||||| Sbjct 68874 GCAAGTGCAGTATTCTTAATTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATGCCT 68933 Query 183667 CTGGGTATCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCTG 183726 | |||||| ||| || || |||| ||| | || ||||||||||| |||||||| || Sbjct 68934 TTAGGTATCTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTT 68993 Query 183727 ATGCACCCCTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCA 183786 |||||||| ||||| ||| ||||| |||||||| || ||||| ||| | ||||||||| Sbjct 68994 ATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGTGCA 69053 Query 183787 ATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACTG-AGTCTGAGTCACA 183845 |||||||||||||| || || || | | |||||| |||| || | | || | Sbjct 69054 ATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGTGAA---ACTGAAGACGGTGTATCT 69110 Query 183846 G--AACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCAT 183903 | ||||| |||||||| || || ||||||||||| || |||||||| || ||||| || Sbjct 69111 GCTAACTACGGTTACAAATTTGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACAC 69170 Query 183904 GGATACTTTGGTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCAC 183963 || |||||||| ||| | |||||||| || || || ||||| || ||| || | ||| Sbjct 69171 GGTTACTTTGGACGTTTAATCTTCCAATACGCAAGTTTCAACAACTCACGTGCTTTACAC 69230 Query 183964 TTCTTCCTTGCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACT 184023 |||||| | |||||||||||||| || || |||||||| ||||||||||| ||||||| Sbjct 69231 TTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGAATTAGCACA 69290 Query 184024 ATGGCATTTAACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGT 184083 |||||||| ||| | || || || ||||||||||| || | ||||| | ||||||||| Sbjct 69291 ATGGCATTCAACTTAAACGGATTCAACTTCAACCAATCAGTTGTTGATAGCCAAGGTCGT 69350 Query 184084 GTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCAC 184143 || | ||||| ||||| ||| || |||||||||||| | | || |||||||| |||||| Sbjct 69351 GTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATGCAC 69410 Query 184144 GAGCGTAATGCTCACAACTTCCCTCTCGA 184172 || ||||| || |||||||||||||| || Sbjct 69411 GAACGTAACGCGCACAACTTCCCTCTAGA 69439 Score = 580 bits (642), Expect = 1e-160 Identities = 735/1008 (73%), Gaps = 2/1008 (0%) Strand=Plus/Plus Query 185973 GATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTTTT 186032 ||||||||| | ||||| || || || || ||| | || ||||| || | | | ||| Sbjct 37918 GATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGTCTTTTATTATTT 37977 Query 186033 CCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAACGTTTGTTACGAGCTGG 186092 || || || | | | ||| ||||||| ||| | || || || || |||||||| ||| Sbjct 37978 CCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTTGTTACATCTTGG 38037 Query 186093 TATACCCACGGGTTGGCGTCTTCTTACCTTGAGGG-TGCTAATTTTCTCACGGCAGCAGT 186151 || || || || || || ||||||||| | ||||| ||| | || | | || | ||| || Sbjct 38038 TACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGCAACTTCT-TAACTGTAGCTGT 38096 Query 186152 GTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 186211 ||||| ||||| | |||||||||||| | | || | ||||| || ||| | || Sbjct 38097 ATCAACACCTGCAAATAGTATGGGTCATTCATTGATCTTATTATGGGGACCAGAGGCACA 38156 Query 186212 AGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGG 186271 ||||||| | | || ||| | ||| | || ||| | |||| |||||| || | || || Sbjct 38157 AGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTTGTCGCATTACATGG 38216 Query 186272 AGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCAGTCGTCTCGTAGGTAT 186331 || |||| | || || ||| | ||||| |||||||| |||||| |||||||| Sbjct 38217 GGCATTTGGATTAATTGGATTCTGTTTACGACAATTTGAAATTGCTCGTCTTGTAGGTAT 38276 Query 186332 CCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGTTAGTGTATTCCT 186391 ||||| || ||||| ||||| ||||| || |||||||| || || ||| ||||||| | Sbjct 38277 TCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATTCGTTTCTGTATTCTT 38336 Query 186392 CATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGCAAT 186451 ||||| ||| | ||||| | |||||||| ||||| |||||||| ||||| || Sbjct 38337 AATCTATCCTTTAGGACAAGCAAGTTGGTTCTTTGCTCCTAGTTTTGGAGTTGCAGCTAT 38396 Query 186452 CTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAATCCATTCCACAT 186511 || ||||||| || ||| | ||||| ||||| |||||||| | |||||||||||||| Sbjct 38397 TTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCACAT 38456 Query 186512 GATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCAATCCATGGTGTTACTGT 186571 ||||||||||||||| || | |||||||| || | || ||||| ||||| | |||||| Sbjct 38457 GATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCTGCAATTCATGGAGCTACTGT 38516 Query 186572 AGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACATTCAAAGCATTCGATACGAC 186631 |||||| || | | |||||||| || || || |||||| || ||| | || Sbjct 38517 AGAAAACACATTATTCGAAGATGGTGATGCTGCGAATACATTCCGTGCTTTCACACCAAC 38576 Query 186632 GCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTCTGGTCACAGATCTTCGG 186691 ||| ||||||||| ||||| ||||| || ||||||||||||||||| || || || || Sbjct 38577 ACAATCAGAAGAAACTTATTCAATGGTAACAGCGAACAGATTCTGGTCTCAAATTTTTGG 38636 Query 186692 AATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGCTCTTTGTTCCTGTTATGGG 186751 |||| ||| || || ||||||||||||||||||||| | |||||||| || | || Sbjct 38637 TGTTGCTTTTTCTAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCAGTAACAGG 38696 Query 186752 TCTTTGGACCTCTTCCATTGGCATTATTGGTCTTGCTCTTAACCTTCGTGCTTATGACTT 186811 | | ||||| ||| |||| || | ||| | || | ||| | | || |||||||| Sbjct 38697 TTTATGGACAAGTTCTTTTGGTATAGTAGGTTTAGCATTAAACTTAAGAGCATATGACTT 38756 Query 186812 TGTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAAGAA 186871 |||| ||| ||| | | ||||| || ||||| || || || || |||||||| || || Sbjct 38757 TGTATCTCAAGAGCTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTATACTAAAAA 38816 Query 186872 TATCCTATTGAATGAAGGTCTACGTGCCTGGATGGCACCAGTGGATCAACCACATGAAAA 186931 |||| |||| || |||||| | | | |||||||| || ||| |||||||||||||| Sbjct 38817 TATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAGGACCAACCACATGAAAA 38876 Query 186932 CTTTGTATTTCCTGAAGAAGTGTTGCCAAGAGGCAACGCTCTGTGATA 186979 |||||||| || || || || || ||| | || ||||| || | ||| Sbjct 38877 TTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAATA 38924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622065081298080